Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtttacattttcaagttgagtgttatgatttccttctgaaagaagatgcattatagtatttgagggtttttctgataatgagtaatttgttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCGGGTCAAGCTCCCTATGAGAAGAGGATCACTGAGCTTTTGAAGGTTGGTA

Basic information

species Arabidopsis thaliana
transcript AT5G02450.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G02450.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM5G850966_T03 (Zea mays), 3'ss of exon 2
tgtttacattttcaagttgagtgt---tatgatttccttctgaaagaagatgcattatagtatttgagggtttttctgataatgagtaatttgttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCGGGTCAAGCTCCCTATGAGAAGAGGATCACTGAGCTTTTGAAGGTTGGTA
  | ||||| |  | | | ||      ||||   |   | |  |      |||| |  | | |||   | | |   | ||    ||| ||||  | |||  ||||| |||  || |||     | |  |||||   || ||||  || ||||| ||    ||||| ||||||||| | |||||||||||| |||||||||| |
-ctgtacatgtaaatgattagcacaagtatgcggtagatttacatatctttgcacttgattgttttctg-tgtccttcattccaagttattttgt-tgttcagAAATCAACGAAGAGGGTGTCTATGGTCAGGGGCCTGATCAGAGAGGTTGCTGGGTTTGCTCCTTATGAGAAGCGTATCACTGAGCTTCTGAAGGTTGGCA

upper sequence: AT5G02450.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM5G850966_T01 (Zea mays), 3'ss of exon 3
tgtttacattttcaagttgagtgttatgatttccttctgaaagaagatgcattat--agtatttgagggtttttctgataatgagtaatttgttatgtgtagAAAACAAGC--AAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCGGGTCAAGCTCCCTATGAGAAGAGGATCACTGAGCTTTTGAAGGTTGGTA
      | |  |||    |  || |  | ||| || || |    |   | || |   ||  | ||| ||||     |   | | ||    ||     ||   | |  ||||    ||     |        | |||    |   ||||  | |||||                                               
------cctgatcagagaggttgctg-ggtttgctccttatgagaagcgtatcactgAGCTTCTGAAGGTTGGCAAGGACAAGCGTGCCCTGAAGCTTGCTAAGAGAAAGCTTGGAACTCACAAGAGGGCAAAGAAGAAGAGAGAGGAGATGGCGGG-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86028277|gb|DR324030.1|DR324030
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028222|gb|DR323975.1|DR323975
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028353|gb|DR324106.1|DR324106
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTWGC
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTT-GC
EST: gi|86077256|gb|DR373013.1|DR373013
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGSCCTAACAACAGMAAAGGG                         AARACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028315|gb|DR324068.1|DR324068
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028251|gb|DR324004.1|DR324004
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|164091352|gb|ES100986.1|ES100986
EST:     CAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTTATCAGGAATCTCATCAAGGAAGTTGC
genomic: CAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTA-TTTTTATCAGGAATCTCATCAAGGAAGTTGC
EST: gi|86028394|gb|DR324147.1|DR324147
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028427|gb|DR324180.1|DR324180
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTT-CG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028338|gb|DR324091.1|DR324091
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028299|gb|DR324052.1|DR324052
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028327|gb|DR324080.1|DR324080
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028414|gb|DR324167.1|DR324167
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028266|gb|DR324019.1|DR324019
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028399|gb|DR324152.1|DR324152
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAARGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATC
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATC
EST: gi|86028389|gb|DR324142.1|DR324142
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         -AAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028433|gb|DR324186.1|DR324186
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028255|gb|DR324008.1|DR324008
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028417|gb|DR324170.1|DR324170
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028240|gb|DR323993.1|DR323993
EST:     CTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCASGAATCTCATCAAGGAAGTTGCG
genomic: CTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028258|gb|DR324011.1|DR324011
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028380|gb|DR324133.1|DR324133
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028406|gb|DR324159.1|DR324159
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028224|gb|DR323977.1|DR323977
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|164210967|gb|ES183286.1|ES183286
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTT-ATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028324|gb|DR324077.1|DR324077
EST:     ASGKKGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTT-CG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028341|gb|DR324094.1|DR324094
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028361|gb|DR324114.1|DR324114
EST:     ACGTTGTGGCCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028375|gb|DR324128.1|DR324128
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028367|gb|DR324120.1|DR324120
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|164057389|gb|ES149183.1|ES149183
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTT-ATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028233|gb|DR323986.1|DR323986
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028226|gb|DR323979.1|DR323979
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028252|gb|DR324005.1|DR324005
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028425|gb|DR324178.1|DR324178
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028323|gb|DR324076.1|DR324076
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028385|gb|DR324138.1|DR324138
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028388|gb|DR324141.1|DR324141
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|125000782|gb|EL073051.1|EL073051
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|116472020|gb|EG514612.1|EG514612
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028334|gb|DR324087.1|DR324087
EST:     RNGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTT-CG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028243|gb|DR323996.1|DR323996
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAG
EST: gi|86028326|gb|DR324079.1|DR324079
EST:     ACGTTGTKRCCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028387|gb|DR324140.1|DR324140
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028382|gb|DR324135.1|DR324135
EST:     ACGTTGTTRCCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028395|gb|DR324148.1|DR324148
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028279|gb|DR324032.1|DR324032
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028383|gb|DR324136.1|DR324136
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028289|gb|DR324042.1|DR324042
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTT-CG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|164089630|gb|ES091476.1|ES091476
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCA
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCA
EST: gi|86028379|gb|DR324132.1|DR324132
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028374|gb|DR324127.1|DR324127
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|164223852|gb|ES030074.1|ES030074
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTT-ATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028409|gb|DR324162.1|DR324162
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028355|gb|DR324108.1|DR324108
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|125091559|gb|EL149382.1|EL149382
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAAT
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAAT
EST: gi|86028330|gb|DR324083.1|DR324083
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028381|gb|DR324134.1|DR324134
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028365|gb|DR324118.1|DR324118
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028411|gb|DR324164.1|DR324164
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028322|gb|DR324075.1|DR324075
EST:     ACGTTGTKGCCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AARACRAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028337|gb|DR324090.1|DR324090
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028316|gb|DR324069.1|DR324069
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028408|gb|DR324161.1|DR324161
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028332|gb|DR324085.1|DR324085
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028384|gb|DR324137.1|DR324137
EST:     ACGTTGDTACCAAACGCGAGCAACCTCCTCGCCCAAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028362|gb|DR324115.1|DR324115
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGSG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028278|gb|DR324031.1|DR324031
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|125228554|gb|EL242639.1|EL242639
EST:     CGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAAGGG                         AAAACAAGCAAAAGGACTTATTTTTATCAGGAATCTCA
genomic: CGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAA-GGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACT-ATTTTTATCAGGAATCTCA
EST: gi|164182277|gb|ES098308.1|ES098308
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTTATCAGGAATCTCATCAAGGAAGTTGC
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTT-ATCAGGAATCTCATCAAGGAAGTTGC
EST: gi|86028280|gb|DR324033.1|DR324033
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTCTTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028392|gb|DR324145.1|DR324145
EST:     ACGTTGTTACCAAACGCGANCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTAT
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTAT
EST: gi|86028435|gb|DR324188.1|DR324188
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028376|gb|DR324129.1|DR324129
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
EST: gi|86028351|gb|DR324104.1|DR324104
EST:     ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGG                         AAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG
genomic: ACGTTGTTACCAAACGCGAGCAACCTCCTCGCCCTAACAACAGAAAAGGGgtaagctctc ... ttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatgcattatagtatttgagggtttttctgataatgagtaatttgttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCGGGTCAAGCTCCCTATGAGAAGAGGATCACTGAGCTTTTGAAGGTTGGTA
                         ttctgat  putative branch site (score: 3)
     attatagtatttga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgtttacattttcaagttgagtgttatgatttccttctgaaagaagatgcattatagtatttgagggtttttctgataatgagtaatttgttatgtgtagAAAACAAGCAAAAGGACTATTTTTATCAGGAATCTCATCAAGGAAGTTGCGGGTCAAGCTCCCTATGAGAAGAGGATCACTGAGCTTTTGAAGGTTGGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - gaaagaa