1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtttcttcttttactatctcattcttcaacttaagtatcttttcagtcagctcataagtaactgtttccagaattagaattacttgacaagtgttaactgttcctttttttttttttttaataacttttttgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAG
species | Arabidopsis thaliana |
transcript | AT5G01220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCCEST: gi|124951935|gb|EL027254.1|EL027254
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
EST: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAEST: gi|86057508|gb|DR353265.1|DR353265
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAA
EST: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCCEST: gi|116409166|gb|EG451758.1|EG451758
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
EST: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCCEST: gi|116409154|gb|EG451746.1|EG451746
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
EST: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCCEST: gi|116409155|gb|EG451747.1|EG451747
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
EST: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAG GTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
genomic: AAAACAGATTCCAGAATTTCATTAGATACCTCCGTGAAATGGGAGACGAGgtttcttctt ... tgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCC
gacaagtgttaactgttcctttttttttttttttaataacttttttgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAG
taataac putative branch site (score: 1)
ttcctttttttttttt CT-rich tract
ttaactgttccttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcttcttttactatctcattcttcaacttaagtatcttttcagtcagctcataagtaactgtttccagaattagaattacttgacaagtgttaactgttcctttttttttttttttaataacttttttgcttcatagGTTATAGTCGTGACGACACATGAAGGTGTTCCTGAAGAGTTTTATGGAGCCAGAGTCATTGGATCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG