1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatccccgcacccttctccattttttgaagtctctgttcattcctacatatacaagcttattctgccttttagtcttgtcatactcgtctcttatttaaccaagtcaccatgggctctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAGCTGCGAAAGGCCTTGCTTTCCTCCACAATGCTGAAAGACCGGTTATTTA
species | Arabidopsis thaliana |
transcript | AT5G01020.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGAEST: gi|116406701|gb|EG449293.1|EG449293
genomic: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGA
EST: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAGEST: gi|163968963|gb|ES102947.1|ES102947
genomic: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAG
EST: AATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAGEST: gi|86072120|gb|DR367877.1|DR367877
genomic: AATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAG
EST: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGGAEST: gi|164131162|gb|ES092126.1|ES092126
genomic: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGG-A
EST: TGAGTTCATTGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTEST: gi|116468710|gb|EG511302.1|EG511302
genomic: TGAGTTCA-TGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTT
EST: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAGEST: gi|47830578|gb|CK120262.1|CK120262
genomic: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAG
EST: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAGEST: gi|86072121|gb|DR367878.1|DR367878
genomic: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAG
EST: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAGEST: gi|116406702|gb|EG449294.1|EG449294
genomic: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAG
EST: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAGEST: gi|125005546|gb|EL077815.1|EL077815
genomic: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAG
EST: TGTTTACGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGATEST: gi|116447998|gb|EG490590.1|EG490590
genomic: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGAT
EST: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAGEST: gi|116447999|gb|EG490591.1|EG490591
genomic: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAG
EST: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAA AAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAG
genomic: TGTTTATGAGTTCATGCTGCGAGGCAGTCTTGAGAATCACCTATTTCGAAgtaatccccg ... ctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAG
agtcttgtcatactcgtctcttatttaaccaagtcaccatgggctctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAGCTGCGAAAGGCCTTGCTTTCCTCCACAATGCTGAAAGACCGGTTATTTA
atttaac putative branch site (score: 3)
ctctctcttc putative PPT
tcttatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatccccgcacccttctccattttttgaagtctctgttcattcctacatatacaagcttattctgccttttagtcttgtcatactcgtctcttatttaaccaagtcaccatgggctctctcttcagAAACCACAGCTCCGCTATCTTGGTCTAGAAGGATGATGATTGCTCTTGGAGCTGCGAAAGGCCTTGCTTTCCTCCACAATGCTGAAAGACCGGTTATTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG