1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagactcgggctctcacatgtgatctgagtagcttgataaacacatttctagatttgttctaattggtggatgttttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG
species | Arabidopsis thaliana |
transcript | AT4G40040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAAGCAGCTTGCT-CAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|116468465|gb|EG511057.1|EG511057
genomic: GGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|301503181|gb|HO208721.1|HO208721
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|164030187|gb|ES015143.1|ES015143
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|164087192|gb|ES016043.1|ES016043
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: TCGTAAGTCTACTGGAGGAAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|301501157|gb|HO206697.1|HO206697
genomic: TCGTAAGTCTACTGGAGG-AAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|124742252|gb|EH833414.1|EH833414
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|116447859|gb|EG490451.1|EG490451
genomic: CCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|124766631|gb|EH856761.1|EH856761
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCAACCAAACCACTGGAGGAGTCAAGAAGCCCCATCEST: gi|164089651|gb|ES196147.1|ES196147
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCA-CCAA-CCACTGGAGGAGTCAAGAAGCCCCATC
EST: GTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCC-ATCGTEST: gi|124943419|gb|EL019601.1|EL019601
genomic: GTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|116483084|gb|EG525676.1|EG525676
genomic: CAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|124881290|gb|EH960192.1|EH960192
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|152035605|gb|BP859103.2|BP859103
genomic: CTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|124925219|gb|EL003232.1|EL003232
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCAEST: gi|164104439|gb|EL975105.1|EL975105
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCA
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGEST: gi|116427491|gb|EG470083.1|EG470083
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAG
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|124714510|gb|EH805912.1|EH805912
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: TTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAEST: gi|47829096|gb|CK118780.1|CK118780
genomic: TTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCA
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|125225278|gb|EL239363.1|EL239363
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|125274699|gb|EL288784.1|EL288784
genomic: CGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|125229303|gb|EL243388.1|EL243388
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|125021358|gb|EL093627.1|EL093627
genomic: CCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|164080421|gb|ES077787.1|ES077787
genomic: CTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAA-G GCTGCACGTAAGTCTGCACCAACCACEST: gi|164187715|gb|ES003803.1|ES003803
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCAC
EST: GTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCEST: gi|116468466|gb|EG511058.1|EG511058
genomic: GTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACC
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|301501881|gb|HO207421.1|HO207421
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|116390647|gb|EG433239.1|EG433239
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|47830179|gb|CK119863.1|CK119863
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|125085420|gb|EL145265.1|EL145265
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: AGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|116427493|gb|EG470085.1|EG470085
genomic: AGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTEST: gi|164214904|gb|ES035339.1|ES035339
genomic: CTCGTAAGTCTACTGGAGGAAAGGCTCCTAGGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
EST: GGAAGCAGCTTGCTACAAAG GCTGCACGTAAGTCTGCACCAACCACTGGAGGAGCCAAGAAGCCCCATCGT
genomic: GGAAGCAGCTTGCTACAAAGgtaagactcg ... ttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGT
agcttgataaacacatttctagatttgttctaattggtggatgttttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG
atgttttaatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagactcgggctctcacatgtgatctgagtagcttgataaacacatttctagatttgttctaattggtggatgttttaatttaagGCTGCACGTAAGTCTGCACCAACCACTGGAGGAGTCAAGAAGCCCCATCGTTACCGTCCAGGAACTGTTGCACTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC