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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattgttgtagaattttaatgctttgttgagttatattattatctgaaaggctaattgaattgtttttcttttgttaaccttttgcagTTGCATCAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTTTGCACAGGGCTCTTTACCCTTCTTGTCATTGACGGGAGTATCTCCTAATACA

Basic information

species Arabidopsis thaliana
transcript AT4G39960.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057935|gb|DR353692.1|DR353692
EST:     TTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTCTCACCATGACAA                         TTGCATCAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTTTGC
genomic: TTTGCTGTTAAAGCTTTTTATCCAAGCAGATTGGAGTCTCACCAAGACAAgtatgattgt ... ccttttgcagTTGCATCAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTTTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattattatctgaaaggctaattgaattgtttttcttttgttaaccttttgcagTTGCATCAGCCAAATAAATTGTCTGGGAGCTTCAAGGTCGAGTATGTTTGCACAGGGCTCTTTACCCTTCTTGTCATTGACGGGAGTATCTCCTAATACA
                                       tgttaac  putative branch site (score: 2)
                              tttttcttttgttaac  CT-rich tract
                   taattgaattgttttt  TA-rich tract