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gtacattcatgcttgtgtatctgttggaatttgtgatacaatgtttttcgtatatatgattacattacgagaaggtacatcgtacacggttgtgataatttggcttttgttttttgatggattaagATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAAATGTCAAAAGCAGGAGTTCCAGCCAAGGAAATGCAAGGGAAAGAAAATG
species | Arabidopsis thaliana |
transcript | AT4G39080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTAATTCAGAGAAGAGCCCATTTCAACGTACTTACGCAGCACAG ATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAAEST: gi|301501304|gb|HO206844.1|HO206844
genomic: CTTAATTCAGAGAAGAGCCCATTTCAACGTACTTACGCAGCACAGgtacattcat ... atggattaagATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAA
EST: CTTAATTCAGAGAAGAGCCCATTTCAACGTACTTACGCAGCACAG ATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAAEST: gi|86064751|gb|DR360508.1|DR360508
genomic: CTTAATTCAGAGAAGAGCCCATTTCAACGTACTTACGCAGCACAGgtacattcat ... atggattaagATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAA
EST: TTACGCAGCACAG ATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAAEST: gi|125036157|gb|EL108426.1|EL108426
genomic: TTACGCAGCACAGgtacattcat ... atggattaagATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAA
EST: TTTCAACGTACTTACGCAGCACAG ATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAAEST: gi|116444120|gb|EG486712.1|EG486712
genomic: TTTCAACGTACTTACGCAGCACAGgtacattcat ... atggattaagATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAA
EST: CTTAATTCAGAGAAGAGCCCATTTCAACGTACTTACGCAGCACAG ATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAAEST: gi|116415767|gb|EG458359.1|EG458359
genomic: CTTAATTCAGAGAAGAGCCCATTTCAACGTACTTACGCAGCACAGgtacattcat ... atggattaagATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAA
EST: CTTAATTCAGAGAAGAGCCCATTTCAACGTACTTACGCAGCACAG ATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAA
genomic: CTTAATTCAGAGAAGAGCCCATTTCAACGTACTTACGCAGCACAGgtacattcat ... atggattaagATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAA
aaggtacatcgtacacggttgtgataatttggcttttgttttttgatggattaagATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAAATGTCAAAAGCAGGAGTTCCAGCCAAGGAAATGCAAGGGAAAGAAAATG
ttttgat putative branch site (score: 4)
ttttgttttttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattcatgcttgtgtatctgttggaatttgtgatacaatgtttttcgtatatatgattacattacgagaaggtacatcgtacacggttgtgataatttggcttttgttttttgatggattaagATTAAAAGATGTGGAGAAATGGCACGGAAAATACGTTTCTTCAGGGATCAAATGTCAAAAGCAGGAGTTCCAGCCAAGGAAATGCAAGGGAAAGAAAATG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA