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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttctctaggatgaaatataatggaagaaatatcaattcaattgtgagtgtctatcccctgttatatcattttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG

Basic information

species Arabidopsis thaliana
transcript AT4G38920.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os11g06890.1 (Oryza sativa), 3'ss of exon 2
-----ttctctaggatgaaatataatggaagaaatatcaattcaattgtgag-tgtctatcccctgttatatcattttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
      | |  | ||  |    |  ||     |   | |    | |  | || || |||       ||| |  ||| |||||       |||| | | | || |||||| ||||| || || |||||||||||||| || ||||| || |||||||||||||| ||||| ||||| || || |||||||| || || |||||  | 
cctcggtgttcatgactaccctttgtgttgagagcttgaggctactcctaagctgcctactttggattaca--attctgatatct---cttgttggt-gttggcagGGCAAATGCACAGCAACCAAAGCTTTTCGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCCCTGTATGGTCTCATTGTGGGCATCATCCTC

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os05g01560.1 (Oryza sativa), 3'ss of exon 2
ttctctaggatgaaatataatggaagaaa-tatcaatt-caattgtgagtgtctatcccctgtt-atatcattttgatacgcaaatttg---tggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
      |  ||   | |||  |        ||||  || | ||||| |||      | | ||||   |  |  |||| |      | ||   |   |      |||||||||||| || ||||||||| | ||||| || ||||| || ||||| || || || |||||||||||||| || || || || || || |||||  | 
------aaaatagcagatagagtttctttctatctgttactattgtaagtaaagcactcttgtttgcaggaaattgacatttggttctggtttacctcctctgcagGGCCAATGCGCAGCAGCCAAAGTTGTTCGTGGGCATGATCCTCATCCTTATCTTTGCAGAAGCTCTTGCTCTGTATGGCCTGATTGTTGGTATCATCCTC

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os02g34510.1 (Oryza sativa), 3'ss of exon 1
-ttctctaggatgaaatataatggaagaaatatcaattcaattgtgagtgtctatcccctgttatat-cattttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
 ||   |   |     |  |     |     | ||    |||| ||| | | ||| |  || |   | |  | |  ||    ||| |    |||| |  |||||| ||||||||||||||||| || || || |||||||| || ||||| || || || ||||| ||||| || || |||||||| || || ||||| |||
atttcatgacactttgtgcagcttgattggaaccacaggaattttgatt-tttatgctttgcttggtgcgctgttctaacataatctact-tttgctctcagGGCAAATGCTCAACAGCCAAAACTGTTTGTGGGTATGATCCTCATCCTTATCTTTGCGGAAGCGCTTGCACTCTATGGTCTCATTGTTGGTATCATCTTG

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G177005_T01 (Zea mays), 3'ss of exon 2
-ttctctaggatgaaatataatggaagaaatatcaattcaattgtgagtgtctatcccctgttatatcattttgatacgcaaatttgtggt--ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
  |  ||   ||| ||  |  |    |   |     ||  |  | |   |  |      ||  || | | |||||     || |||  ||     |||  |||||| ||||| ||||||||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||| || ||||| || || || || ||  | 
agtagctcacatgcaactttctcctggcgtttcttcttttacagaggaggcatgggaattgaaattttagtttgac---taatttttgggccaccgatttcagGGCAAATGCGCAACAGCCAAAGCTTTTCGTTGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTCTATGGTCTAATTGTTGGAATTATCCTT

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM5G893252_T01 (Zea mays), 3'ss of exon 2
--ttctctaggatgaaatataatggaagaaatatcaattcaattgtgagtgtctatcccctgttatatcattttgat---acgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
  |  | ||     |||| |  || |    | | |  |  |||| |      |           || ||||| | ||   |  |  |||| ||  | |    |||||| ||||| || ||||||||| | || || || |||||||| ||||| || ||||| |||||||||||||| ||||||||||||||||| |||||| | 
tctcttatacagccaaatttt-tgcaccttaaacc--tcaaattatatccagcccgttgtcaacatgtcattcttatctaattctgatttatg--tcgtctccagGGCGAATGCACAGCAGCCAAAGTTGTTTGTGGGCATGATTCTGATCCTTATCTTCGCAGAAGCTCTTGCTCTGTACGGTCTCATCGTCGGTATCATTCTC

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G028432_T01 (Zea mays), 3'ss of exon 1
ttctctaggatgaaatataatggaagaaatatcaat-tcaattgtgagtgtctatccc--ctgttatatcattttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
  ||  |  |       || | |   ||||   | | ||||  | |  || ||  |    | |  | ||| |  | || |  | | ||||  |||   | |||||| || ||||| ||||||||||| || || || ||||| || |||||||| ||||||||||| || || |||||||||||||||||||| |||||  | 
cacttaaacacttgtcctacttgggaaaatcggattgtcaaccg-ggctggctgcctagacggcgacatc-tcctcatcctgacacttgttcttttgcg-cagGGCGAACGCTCAGCAGCCAAAGCTGTTTGTGGGCATGATCCTCATCCTCATCTTCGCTGAAGCGCTCGCCCTATACGGTCTCATCGTCGGCATCATCCTC

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: AC216067.3_FGT002 (Zea mays), 3'ss of exon 2
---------ttctctagg---atgaaatataatggaagaaatatcaattcaattgtgagtgtctatcccctgttatatcattttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
         |||| |  |    |    | | | ||| | | ||     | | ||| || |    ||    | ||   | |||||  |  || |          ||||  |||||| ||||| |||||||| |||||||| || || ||||| || |||||||||||||| ||||| |||||||| ||||||||||| || || || ||  | 
taatctcctttctttgagcgtttcttcttttaaggaggcagtacatgcttatttgggaattgaaattt--tattgacttattttc-tgggcca---------ctgatttcagGGCGAATGCACAACAGCCGAAGCTTTTTGTGGGCATGATCCTCATCCTCATTTTCGCAGAAGCGCTTGCTCTGTACGGTCTCATTGTTGGAATTATCCTT

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G101020_T01 (Zea mays), 3'ss of exon 2
ttctctaggatgaaatataatggaagaaatatcaattcaattgtgag-tgtctatcccctgttatatcattttgatacgcaaatttgtggtttgatg-acagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
   || | ||       || |   | || |||    |||| ||  |  ||||||  |        | ||| |       | ||    || | |  ||  |||||| || ||||| ||||| ||| | || ||||| ||||| || ||||| ||||| |||||||| ||||| || || |||||||||||||| || ||  | 
--ttcaaagagttgtcctagttcgaaaattatattatcaactggaacctgtctactctagaccgcaacatctctccgtcctaacacttgttcttttgtgcagGGCGAACGCTCAGCAGCCGAAGTTGTTTGTTGGCATGATCCTCATCCTTATTTTTGCTGAAGCACTTGCCCTCTATGGTCTCATCGTCGGCATTATCCTC

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S1_66V6.1 (Physcomitrella patens), 3'ss of exon 2
-------------------------------------------------------------------------------ttctctaggatgaaatataatggaagaaatatcaattca-attgtg------agtgtctatcccctgttatatcattttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
                                                                               | || | |  | |  |||  |    ||| |  || |    ||  ||      | | | | |  |||| | |||   |||||  || |   | ||  |  |     || || ||||| || ||||| ||||| ||||||||||||||| | ||||||||||| || || || |||||| | || || || |||||||| ||||| |||
gtagtaatcccgtctctacgtttttctgcatttagtatttttctttttttcttcttttttttttctgcttgatatgatttcctattgctttatttattttctgtgaattgccattatgcatcatgtgatgcaatttttgttacctgatgtatt-ctttgac-cggattatggttatacgtctgtagAGCGAATGCCCAGCAGCCCAAGCTCTTCGTTGGTATGATTTTGATCCTCATTTTTGCCGAGGCGCTTGCTTTGTATGGACTTATCGTCGGCATCATCTTG

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S45_100V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------------------------------------------------------------------------------------ttctctaggatgaaatataatggaagaa-atatcaattcaattgtgagtgtctatcccctgtt----atatcatt-ttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
                                                                                                ||| |   |||| |  || | |   ||  ||    | | | || || | |  | |    ||||    || |  || || |   | |   | |    | | |  |||||| |||||||| ||||| ||||| ||||| || ||||| || ||||||||||||||||| || |||||  | || || || |||||||| || || |||
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatgga-catgaggtttgaggatgcagagtgagttatgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggca--tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S45_97V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------------------------------------------------------------------------------------ttctctaggatgaaatataatggaagaa-atatcaattcaattgtgagtgtctatcccctgtt----atatcatt-ttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
                                                                                                ||| |   |||| |  || | |   ||  ||    | | | ||||| | |  | |    ||||    || |  || || |   | |   | |    | | |  |||||| |||||||| ||||| ||||| ||||| || ||||| || ||||||||||||||||| || |||||  | || || || |||||||| || || |||
gtagcggacgaacccttgcaatgtggtgatgtatgggaatacgtagtgaagttggaaagagagatgtaatcgggattgaaatggattcgcagagggttcacggtgatgga-catgaggtttgaggatgcagagtgagttgtgggagggtttggtgtgttgtggatgtggttgttaacgtggaggatggca--tcgtttgcagGGCGAATGCTCAGCAGCCGAAGCTGTTCGTGGGGATGATCCTGATCCTCATTTTCGCTGAGGCGCTTGCCTTGTATGGACTGATCGTCGGCATTATCTTG

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: PP1S2_120V6.1 (Physcomitrella patens), 3'ss of exon 2
------------------------------------------------------------------ttctctaggatgaaatataatggaagaaatatcaattcaattgtgagtgtctatcccctgttatat-cat-----tttgatacgcaaatttgtggtttgatg-acagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
                                                                   |||||    |   ||  ||    |||  |  |  ||  ||  | |    | ||       || || ||      |||||   |    ||| |  |||  ||  ||| |||||||| || ||||| ||||||||||| || |||||  | || |||||||||||||| ||||||||  ||||||| || || || || |||||||||
gtaataattcaagatctgagcacatctataagaaatgtgtaacacataggttgaatggtgaatcttgtctcttttcttcgattcaaattcagagctgacttttggatcataacctaccattggtaaatacatgcacgggggtttgaccggagggtttatttttttgtgcgcagAGCCAATGCCCAGCAGCCGAAGCTTTTCGTGGGAATGATCTTGATTCTCATTTTCGCTGAGGCTCTTGCCTTATACGGGCTGATTGTGGGCATCATTTTG

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: EFJ37480 (Selaginella moellendorffii), 3'ss of exon 2
-ttctctaggatgaaatataatggaagaaatatcaattcaattgtgagtgtctatcccctgttatatcattttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
 |  | |          |   |||     | |   |||    ||   |   ||   | ||||| | |  | | | |     | |||      |  | |||||||||| ||||||||||||||||| ||||| || |||||  | |||||||| ||||| || || || ||||| |||||  | ||||| ||||||||| | 
atcatttgaagatcgcgagcttggtcctcacaa-gatttccctgctggaaactccactctgttttcttctctggctttctcactttccatcgttttcacagGGCCAACGCTCAACAGCCAAAGCTCTTCGTGGGCATGATCTTGATCCTCATCTTCGCCGAGGCGCTGGCTCTCTACGGATTGATCGTGGGGATCATTCTT

upper sequence: AT4G38920.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: EFJ33972 (Selaginella moellendorffii), 3'ss of exon 2
-ttctctaggatgaaatataatggaagaaatatcaattcaattgtgagtgtctatcccctgttatatcattttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
 |  | |          |   |||     | |   |||    ||   |   ||   | ||||| | |  | | | |     | |||      |  | |||||||||| ||||||||||||||||| ||||| || |||||  | |||||||| ||||| || || || ||||| |||||  | ||||| ||||||||| | 
atcatttgaagatcgggagcttggtcctcacaa-gatttccctgctggaaactccactctgttttcttctctggctttctcactttccatcgttttcacagGGCCAACGCTCAACAGCCAAAGCTCTTCGTGGGCATGATCTTGATCCTCATCTTCGCCGAGGCGCTGGCTCTCTACGGATTGATCGTGGGGATCATTCTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164215385|gb|ES183924.1|ES183924
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCC
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCC
EST: gi|116466768|gb|EG509360.1|EG509360
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
EST: gi|124748811|gb|EH838941.1|EH838941
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTT
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTT
EST: gi|164165560|gb|ES083853.1|ES083853
EST:     GTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTC
genomic: GTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTC
EST: gi|86079095|gb|DR374852.1|DR374852
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
EST: gi|86025395|gb|DR321148.1|DR321148
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
EST: gi|116414110|gb|EG456702.1|EG456702
EST:     TTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
genomic: TTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
EST: gi|86025413|gb|DR321166.1|DR321166
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
EST: gi|86025412|gb|DR321165.1|DR321165
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
EST: gi|164111254|gb|ES099745.1|ES099745
EST:     CGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
genomic: CGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
EST: gi|116417128|gb|EG459720.1|EG459720
EST:     GATGTTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
genomic: GATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
EST: gi|86025396|gb|DR321149.1|DR321149
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
EST: gi|164083812|gb|ES142425.1|ES142425
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGACTCAACAGCCAAAG
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATG-CTCAACAGCCAAAG
EST: gi|301501561|gb|HO207101.1|HO207101
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
EST: gi|86081266|gb|DR377023.1|DR377023
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCAT
EST: gi|125145507|gb|EL180704.1|EL180704
EST:     GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAG                         GGCCAATGCTCAACAGCCAAAGCTTTCCGTTGGTATGATT
genomic: GGTCTTTCAGCTGGAATGGCCATAGGTATCGTTGGCGATGCTGGTGTCAGgtacgatcct ... ttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtctatcccctgttatatcattttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG
               ttatatcattttgata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttctctaggatgaaatataatggaagaaatatcaattcaattgtgagtgtctatcccctgttatatcattttgatacgcaaatttgtggtttgatgacagGGCCAATGCTCAACAGCCAAAGCTTTTCGTTGGTATGATTCTTATCCTCATTTTCGCTGAAGCTCTTGCTCTATACGGTCTCATCGTCGGGATCATTTTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - gatgaaa
- - - - - - - - - - - -aagaaat
- - - - - - - - - - - - - - - - caattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgcaaa