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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttatatgtgatcaaagttgctgatttgtgtcaaagtttcgatttttgtttgtttgtttgtttgtttatgtgagtttttgttgtagGTGTTTCTCCAAGTGACTACACTGTCCCTGAAGATGTCAAAGCTGCTGGCTTTGAGATTTGTGCTGACGAATTAGGATCAATTGTTGAAAGTCATGATGT

Basic information

species Arabidopsis thaliana
transcript AT4G37640.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G37640.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv07s0129g00110.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtttata-tgtgatcaaagttg-ctgatttgtgtcaaagtttcgatttttgtttgtttgtttgtttgtttatgtgagtttttgttgtagGTGTTTCTCCAAGTGACTACACTGTCCCTGAAGATGTCAAAGCTGCTGGCTTTGAGATTTGTGCTGACGAATTAGGATCAATTGTTGAAAGTCATGATGT
||||| || |  ||  |||||   |  || || | | | |    ||  |  ||     |||       | | ||      |   |  ||| ||||||  ||   || |||||   ||| ||||| ||  |||||||||| || ||| ||||||||||||| ||||| ||||| ||||| ||| | ||||||||
gtgagcttcttctgaaatcaattatatctaatatttattatg--ttaaaacttaaaaggttctccaaatcgattcctcttgggatatttgcagGTGTACCTGTCAGCGACTATGTTGTACCTGAGGAAATCAAAGCTGCAGGTTTTCAGATTTGTGCTGATGAATTGGGATCCATTGTCGAAGGCCATGATGT

upper sequence: AT4G37640.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv07s0129g00180.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtttata-tgtgatcaaagttgctgatttgtgtcaaagtttcgatttttgtttgtttgtttgtttgtttatgtgagtttttgttgtagGTGTTTCTCCAAGTGACTACACTGTCCCTGAAGATGTCAAAGCTGCTGGCTTTGAGATTTGTGCTGACGAATTAGGATCAATTGTTGAAAGTCATGATGT
||||| || |  ||  |||||   |    | |  |    | |||   | ||       | |     ||  ||  | |  |  | | ||| ||||||  ||   || |||||   ||| ||||| ||  |||||||||| || ||| ||||||||||||| ||||| ||||| ||||| ||| | ||||||||
gtgagcttcttctgaaatcaattatatctaatacttattatgttaaaacttaaaaggttctccaaattgattcctcttgggatat-ttgcagGTGTACCTGTCAGCGACTATGTTGTACCTGAGGAAATCAAAGCTGCAGGTTTTCAGATTTGTGCTGATGAATTGGGATCCATTGTCGAAGGCCATGATGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagtttcgatttttgtttgtttgtttgtttgtttatgtgagtttttgttgtagGTGTTTCTCCAAGTGACTACACTGTCCCTGAAGATGTCAAAGCTGCTGGCTTTGAGATTTGTGCTGACGAATTAGGATCAATTGTTGAAAGTCATGATGT
                                           tttttgtt  CT-rich tract
          atttttgtttgttt  TA-rich tract