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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggattgtttcattatttgatcattcgaaaacaatggttatgttggccaacatttttttttttaaaaggaattttatctattgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGACCAAATAAAG

Basic information

species Arabidopsis thaliana
transcript AT4G37445.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86053793|gb|DR349550.1|DR349550
EST:     GCTATCAACAACTTCGACGATTTTCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
genomic: GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
EST: gi|19800029|gb|AU231319.1|AU231319
EST:     TTTCCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCAGCCAGGCACTTCGATTTCCCAAGCCCCGG
genomic: TTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAA-CCCCGG
EST: gi|86053796|gb|DR349553.1|DR349553
EST:     GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
genomic: GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
EST: gi|86053794|gb|DR349551.1|DR349551
EST:     GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCANGCAGGCACTTCGATTTCCCAACCCCGGA
genomic: GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
EST: gi|86053795|gb|DR349552.1|DR349552
EST:     GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
genomic: GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
EST: gi|19879124|gb|AU239955.1|AU239955
EST:     GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAA                         CAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA
genomic: GCTATCAACAACTTCGACGATTTCCACGTTGCTGTTTTAGACATCTTTAAgtaaggattg ... ttgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttatgttggccaacatttttttttttaaaaggaattttatctattgagtgcagCAACTTCAACTCGGCTTTACCAGGCAGGCACTTCGATTTCCCAACCCCGGACCAAATAAAG
             aacattttttttttta  TA-rich tract