1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtagtatcatctttgttagtttcttatagtttagctgctgagtttggatttaaaggacacaattcatgtggactctgtttagaaaagaatgttgtgttgatttacactttcttgttttttttttaaagAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGACCGGGAAATGTATCTCCTCGTCGTCCTGTTCCGGGTCATATAACAAAACCTCCTTAT
species | Arabidopsis thaliana |
transcript | AT4G37040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAATTATCAAGAACCTTTTCTGGATTAACCGATCTCCTGTTTAATAGAAG AAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGACCGGGAAAEST: gi|19878343|gb|AU239174.1|AU239174
genomic: CAATTATCAAGAACCTTTTCTGGATTAACCGATCTCCTGTTTAATAGAAGgtagtatcat ... ttttttaaagAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGACCGGGAAA
EST: CAATTATCAAGAACCTTTTCTGGATTAACCGATCTCCTGTTTAATAGAAG AAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGACCGGGAAA
genomic: CAATTATCAAGAACCTTTTCTGGATTAACCGATCTCCTGTTTAATAGAAGgtagtatcat ... ttttttaaagAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGACCGGGAAA
tctgtttagaaaagaatgttgtgttgatttacactttcttgttttttttttaaagAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGACCGGGAAATGTATCTCCTCGTCGTCCTGTTCCGGGTCATATAACAAAACCTCCTTAT
tgttgat putative branch site (score: 4)
tttacactttcttgtt CT-rich tract
atttacactttcttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtatcatctttgttagtttcttatagtttagctgctgagtttggatttaaaggacacaattcatgtggactctgtttagaaaagaatgttgtgttgatttacactttcttgttttttttttaaagAAATGAAGATGAAGTTATTGATGGCAAGAGAAAACGTCTGAGACCGGGAAATGTATCTCCTCGTCGTCCTGTTCCGGGTCATATAACAAAACCTCCTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC