1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacataatcattttattgtctttccttcgaatattgataatcggtgatgtaatgttgaattgttggtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAACTTACCAACTTCAAGTTGAGTTCCCTGAGCATTATCCTATGGAAGCTCCA
species | Arabidopsis thaliana |
transcript | AT4G36410.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACG ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAACEST: gi|86046992|gb|DR342747.1|DR342747
genomic: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACG ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAACEST: gi|86046995|gb|DR342750.1|DR342750
genomic: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACG ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAACEST: gi|86081006|gb|DR376763.1|DR376763
genomic: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACG ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAACEST: gi|86046993|gb|DR342748.1|DR342748
genomic: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACG ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAACEST: gi|124892520|gb|EH971422.1|EH971422
genomic: ACCAATCCTCCTTCTGGTTTCAAGCACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: CTGATAATCTCCAACG ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAACEST: gi|86046996|gb|DR342751.1|DR342751
genomic: CTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
EST: AATCCTCCTTCTGGTNTTCAAGGCCACAGAGTCTCTGATAATCTCCAACG ATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
genomic: AATCCTCCTTCTGGT-TTCAA-G-CACAGAGTCTCTGATAATCTCCAACGgtacataatc ... gtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAAC
tttccttcgaatattgataatcggtgatgtaatgttgaattgttggtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAACTTACCAACTTCAAGTTGAGTTCCCTGAGCATTATCCTATGGAAGCTCCA
tattgat putative branch site (score: 3)
aatattgataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacataatcattttattgtctttccttcgaatattgataatcggtgatgtaatgttgaattgttggtgtaaacagATGGATCATTGAAGTGCATGGAGTTCCAGGAACTCTTTACGCCAATGAAACTTACCAACTTCAAGTTGAGTTCCCTGAGCATTATCCTATGGAAGCTCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG