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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctgagatcttcatttgaactactcatctgctctgtttttttccagatttgattcgaactgattcttgtttcttgttaatctttgtgtagATTGATGTCATTGTTAGTCTGATAAGTGGTAGACTTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G35840.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35840.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv00s0264g00020.t01 (Vitis vinifera), 3'ss of exon 2
--gtgagctgagatcttcatttgaact-actcatctgctctgtttttttc-cagatttgattcgaactg----attcttgtttcttgttaatctttgtgtagATTGATGTCATTGTTAGTCTGATAAGTGGTAGACTTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAG
   |    | |   |||   | ||  | | |  |  ||| |  |    |   | |||| ||    | ||    |||  ||| |  | || |   ||||  |||||||||| ||||| || ||| ||||||||||||| || || ||  | || ||||| || ||||||||||| || |||||||||
ccttatattaatgacttgggtggatttgatttctgagctttaatcgagtgataaatttcatctttaatgcccaattgatgtattctcttgaa--ttgtacagATTGATGTTATTGTAAGCCTGCTAAGTGGTAGACTCGTTCGTGAGAGGATCGGTCCTGCCATGCTAAGTGCAGTGCAAAGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084376|gb|DR380135.1|DR380135
EST:     TTGTTCTTTGGAAATCTAATGAGTCACGTTTTGGATGTCTCCTCTACTTG                         ATTGATGTCATTGTTAGTCTGATAAGTGGTAGACTTGTGCGGGAACGAATA
genomic: TTGTTCTTTGGAAATCTAATGAGTCACGTTTTGGATGTCTCCTCTACTTGgtgagctgag ... ctttgtgtagATTGATGTCATTGTTAGTCTGATAAGTGGTAGACTTGTGCGGGAACGAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttccagatttgattcgaactgattcttgtttcttgttaatctttgtgtagATTGATGTCATTGTTAGTCTGATAAGTGGTAGACTTGTGCGGGAACGAATAGGTCCAGCAATGCTAAGTGCGGTTCAAAGTCAG
                                      tgttaat  putative branch site (score: 3)
                                            tctttgt  CT-rich tract
                                        ttaatcttt  TA-rich tract