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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctgttttttttccctgattcgttaatggagaatctctgttttgattggtctctctaacgatgtgctttgtttctcgtgtttttcaacttctcagCTTTGATG

Basic information

species Arabidopsis thaliana
transcript AT4G35740.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876818|gb|AU237649.1|AU237649
EST:     ACCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCCTTTGATTG                         CTTTGATG
genomic: ACCTGCATTAGCTAAACCTGGAATCGTCCTTGTTGTGTCTCCTTTGATTGgtaaatctgt ... aacttctcagCTTTGATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgattggtctctctaacgatgtgctttgtttctcgtgtttttcaacttctcagCTTTGATG
            ctctaac  putative branch site (score: 2)
                                       tttttcaacttctc  putative PPT
                                       tttttcaa  TA-rich tract