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gtaagttacctttgctgttagcacaattgaaaagttatcttctttgagtttttttttaattgataatggttttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTTAACCAATTGGCTGAGCAGCTTCAGAGATCTATTCCTAACGCTGGCCAGG
species | Arabidopsis thaliana |
transcript | AT4G35450.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCCTTTEST: gi|124786574|gb|EH876253.1|EH876253
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: TATGGCTAGTATTCTCAAC GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTTEST: gi|124750583|gb|EH840713.1|EH840713
genomic: TATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: ATATGGCTAGTATTCTCAAC GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTTEST: gi|125101748|gb|EL156764.1|EL156764
genomic: ATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: GCTAGTATTCTCAAC GATCCTAGCTTCAGAGAAATGGCTGAGCAAATAGCTAAAGATCEST: gi|124874209|gb|EH955854.1|EH955854
genomic: GCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATC
EST: CTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC GATCCTAGCATCAGAGAAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTEST: gi|125224035|gb|EL238120.1|EL238120
genomic: CTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAA-TGGCTGAGCAAATAGCTAAAGATCCTGCGTT
EST: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC GATCCTAGCATCAGAGAAATGGEST: gi|86041556|gb|DR337311.1|DR337311
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGG
EST: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCCTTTEST: gi|152034676|gb|BP834471.2|BP834471
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTTEST: gi|86041544|gb|DR337299.1|DR337299
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCCTTTEST: gi|86041563|gb|DR337318.1|DR337318
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
EST: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAAC GATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCCTTT
genomic: GCTTGAATTTCAATGCTTTTGATTTCTCTAATATGGCTAGTATTCTCAACgtaagttacc ... ttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTT
ttgaaaagttatcttctttgagtttttttttaattgataatggttttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTTAACCAATTGGCTGAGCAGCTTCAGAGATCTATTCCTAACGCTGGCCAGG
ttttttttgt CT-rich tract
tttgagttttttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttacctttgctgttagcacaattgaaaagttatcttctttgagtttttttttaattgataatggttttttttgtagGATCCTAGCATCAGAGAAATGGCTGAGCAAATAGCTAAAGATCCTGCGTTTAACCAATTGGCTGAGCAGCTTCAGAGATCTATTCCTAACGCTGGCCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC