Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatggacttgacatattggctttttaatgtaataaatgtttttggagtcaaactgttctttaattatgtgttctagggatcacttctttgccattagcttccatcaacttctgttgatttcgctttctgtgattgaaatctgcagGCAGGATTGTTATCGGACTATATGGCACTGTTGTACCCAAAACTGTAG

Basic information

species Arabidopsis thaliana
transcript AT4G34960.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164204411|gb|ES121302.1|ES121302
EST:     AATCACCAACAGGGTTTTTCTCGATGTTGATATTGATGGCCAACGCTTAG                         GCAGGATTGTTATCGGACTATATGGCAC
genomic: AATCACCAACAGGGTTTTTCTCGATGTTGATATTGATGGCCAACGCTTAGgtaaatggac ... aaatctgcagGCAGGATTGTTATCGGACTATATGGCAC
EST: gi|163972762|gb|ES193312.1|ES193312
EST:     AATCACCAACAGGGTTTTTCTCGATGTTGATATTGATGGCCAACGCTTAG                         GCAGGATTGTTATCGGACTATATGGCACTGTTG
genomic: AATCACCAACAGGGTTTTTCTCGATGTTGATATTGATGGCCAACGCTTAGgtaaatggac ... aaatctgcagGCAGGATTGTTATCGGACTATATGGCACTGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattagcttccatcaacttctgttgatttcgctttctgtgattgaaatctgcagGCAGGATTGTTATCGGACTATATGGCACTGTTGTACCCAAAACTGTAG
                     tgttgat  putative branch site (score: 4)
                                         attgaaat  TA-rich tract