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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattccctctctctatctctcttttgttattaatctcttgatgattgcaaaaaaaaaattgatttttgagttttccttgttgttgtaatgaagGTATTGGAATTGGGATGTGGGAACTCTCAGTTGTGTGAAGAGTTGTATAAGGATGGGATTGTTGATATTACCTGCATTGATTTATCTTCCGTGGCGGTAG

Basic information

species Arabidopsis thaliana
transcript AT4G34360.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgattgcaaaaaaaaaattgatttttgagttttccttgttgttgtaatgaagGTATTGGAATTGGGATGTGGGAACTCTCAGTTGTGTGAAGAGTTGTATAAGGATGGGATTGTTGATATTACCTGCATTGATTTATCTTCCGTGGCGGTAG
                  aattgat  putative branch site (score: 4)
                                ttttccttgttgtt  putative PPT
          aaaaaaaaaattgatt  TA-rich tract