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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtcaaagatctttactttacttgctcttcttactctcctggtctgcttctctcagcctaagaccaaattgatgtgttctgtctcaaagaatggttgcccttgcccgattatttatattaaaaatctctcttttcttgtttttttttttctttgctgtatagCCTCAAGTTGCTTCAGCTAGTGTTAATCTCACCACCGAGACGGCAATTGTGTGGCCTGTACCGGAAGCTAAAAGTGTACCTGATTGGCAAAAGAGTTTAG

Basic information

species Arabidopsis thaliana
transcript AT4G33520.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124762278|gb|EH852408.1|EH852408
EST:     TGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAA                         CCTCAAGTTGCTTCAGCTAGTGTTAATCTCACCACCGAGACGGCAATTGTG
genomic: TGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAAgtaagtgtca ... tgctgtatagCCTCAAGTTGCTTCAGCTAGTGTTAATCTCACCACCGAGACGGCAATTGTG
EST: gi|19876713|gb|AU237544.1|AU237544
EST:     TGACATGTGGAGGGTGNTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAA                         CCTCAAGTTGCNTCAGCT
genomic: TGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAAgtaagtgtca ... tgctgtatagCCTCAAGTTGCTTCAGCT
EST: gi|86070587|gb|DR366344.1|DR366344
EST:     TGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAA                         CCTCGAGTTGCTTCAGCTAGCGATAATCTCACCACCGAGACGGCAATTGTG
genomic: TGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAAgtaagtgtca ... tgctgtatagCCTCAAGTTGCTTCAGCTAGTGTTAATCTCACCACCGAGACGGCAATTGTG
EST: gi|125029742|gb|EL102011.1|EL102011
EST:     TGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAA                         CCTCAAGTTGCTT
genomic: TGACATGTGGAGGGTGTTCAGCAAGTGTGAAGAAGATACTGGAAAGCCAAgtaagtgtca ... tgctgtatagCCTCAAGTTGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attatttatattaaaaatctctcttttcttgtttttttttttctttgctgtatagCCTCAAGTTGCTTCAGCTAGTGTTAATCTCACCACCGAGACGGCAATTGTGTGGCCTGTACCGGAAGCTAAAAGTGTACCTGATTGGCAAAAGAGTTTAG
                 tctctcttttcttgtt  CT-rich tract
     ttatattaaaaatctc  TA-rich tract