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gttggtctttcttgaatagaaggaactagtatccatttaaacgcgtcattttcactaatcaaatgttttgtctttaatgttgatcatgttcttgtggagtatagAGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA
species | Arabidopsis thaliana |
transcript | AT4G32120.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCAGTACAGAGCAGCACTCAATACTGTGCTTAAGATGAATTATGATCAG AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAEST: gi|164071111|gb|EL977202.1|EL977202
genomic: CGCAGTACAGAGCAGCACTCAATACTGTGCTTAAGATGAATTATGATCAGgttggtcttt ... tggagtatagAGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA
EST: GAATTATGATCAG AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAEST: gi|164133040|gb|EL981447.1|EL981447
genomic: GAATTATGATCAGgttggtcttt ... tggagtatagAGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA
EST: GAATTATGATCAG AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAAEST: gi|86064341|gb|DR360098.1|DR360098
genomic: GAATTATGATCAGgttggtcttt ... tggagtatagAGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA
EST: CGCAGTACAGAGCAGCACTCAATACTGNGCTTAAGAGGAATTATGATCAG AGGCCTAAGGTTCTTACGGGGGAGGACAAACTTEST: gi|86064342|gb|DR360099.1|DR360099
genomic: CGCAGTACAGAGCAGCACTCAATACTGTGCTTAAGATGAATTATGATCAGgttggtcttt ... tggagtatagAGGCCTAAGGTTCTTACGGTGGAGGACAAACTT
EST: CGCAGTACAGAGCAGCACTCAATACTGTGCTTAAGAGGAATTATGATCAG AGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA
genomic: CGCAGTACAGAGCAGCACTCAATACTGTGCTTAAGATGAATTATGATCAGgttggtcttt ... tggagtatagAGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA
tttcactaatcaaatgttttgtctttaatgttgatcatgttcttgtggagtatagAGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA
ttcttgt CT-rich tract
taatcaaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtctttcttgaatagaaggaactagtatccatttaaacgcgtcattttcactaatcaaatgttttgtctttaatgttgatcatgttcttgtggagtatagAGGCCTAAGGTTCTTACGGTGGAGGACAAACTTGTGGTCCTTGGATGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA