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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttcacagtcaagatattattctcattatcactattgtagacttcttggacttccatacattcatcagtcaacttttcgatggtgcgtttttatcacagTGGCACAATTATTTAAGAGGCTCCATCTCCACTGCACCACTGAGAAGTTTCGTGTGGACATGTCTAAGCTTAGAATTGGTTTGGTTGAAAACTGAGGAGA

Basic information

species Arabidopsis thaliana
transcript AT4G32010.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86068791|gb|DR364548.1|DR364548
EST:     CTCCTGTTACTGGAGACAAACCTGCATACATTTCTGTCATCTCTGTTAAG                         TGGCACAATTATTTAAGAGGCTCCATCTCCACTGCACCACTGAGAAGTTTC
genomic: CTCCTGTTACTGGAGACAAACCTGCATACATTTCTGTCATCTCTGTTAAGgtattacatt ... tttatcacagTGGCACAATTATTTAAGAGGCTCCATCTCCACTGCACCACTGAGAAGTTTC
EST: gi|19875090|gb|AU235921.1|AU235921
EST:     CTCCTGTTACTGGAGACAAACCTGCATACATTTCTGTCATCTCTGTTAAG                         TGGCACAATTATTTAAGAGGCTCCATCTCCACTGCACCACTGAGAAGTTTC
genomic: CTCCTGTTACTGGAGACAAACCTGCATACATTTCTGTCATCTCTGTTAAGgtattacatt ... tttatcacagTGGCACAATTATTTAAGAGGCTCCATCTCCACTGCACCACTGAGAAGTTTC
EST: gi|116432611|gb|EG475203.1|EG475203
EST:     CTCCTGTTACTGGAGACAAACCTGCATACATTTCTGTCATCTCTGTTAAG                         TGGCACAATTATTTAAGAGGCTCCATCTCCACTGCACCACTGAGAAGTTTC
genomic: CTCCTGTTACTGGAGACAAACCTGCATACATTTCTGTCATCTCTGTTAAGgtattacatt ... tttatcacagTGGCACAATTATTTAAGAGGCTCCATCTCCACTGCACCACTGAGAAGTTTC
EST: gi|116472023|gb|EG514615.1|EG514615
EST:     CTCCTGTTACTGGAGACAAACCTGCATACATTTCTGTCATCTCTGTTAAG                         TGGCACAATTATTTAAGAGGCTCCATCTCCACTGCACCACTGAGAAGTTTC
genomic: CTCCTGTTACTGGAGACAAACCTGCATACATTTCTGTCATCTCTGTTAAGgtattacatt ... tttatcacagTGGCACAATTATTTAAGAGGCTCCATCTCCACTGCACCACTGAGAAGTTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttggacttccatacattcatcagtcaacttttcgatggtgcgtttttatcacagTGGCACAATTATTTAAGAGGCTCCATCTCCACTGCACCACTGAGAAGTTTCGTGTGGACATGTCTAAGCTTAGAATTGGTTTGGTTGAAAACTGAGGAGA
                                           tttttatc  CT-rich tract
                                           tttttatca  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttcacagtcaagatattattctcattatcactattgtagacttcttggacttccatacattcatcagtcaacttttcgatggtgcgtttttatcacagTGGCACAATTATTTAAGAGGCTCCATCTCCACTGCACCACTGAGAAGTTTCGTGTGGACATGTCTAAGCTTAGAATTGGTTTGGTTGAAAACTGAGGAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - caagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - -catacat