1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacttttcgccgttctatcgagtatatggtagaaattacgcatcagtttattcaaaatcttacttttttgttttcgattaaacttgaacagGATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAG
species | Arabidopsis thaliana |
transcript | AT4G31990.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAG GATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAGEST: gi|124766630|gb|EH856760.1|EH856760
genomic: TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAGgtacttttcg ... acttgaacagGATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAG
EST: TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAG GATAAGCTAAAGCTTGGAACTTCTGCTTCEST: gi|125205383|gb|EL220337.1|EL220337
genomic: TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAGgtacttttcg ... acttgaacagGATAAGCTAAAGCTTGGAACTTCTGCTTC
EST: TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAG GATAAGCTAAAGCTTGGAA
genomic: TAATGTTATCTCTCGGTTCCACTTCTCTGTTACCGCGCGAGATTAACAAGgtacttttcg ... acttgaacagGATAAGCTAAAGCTTGGAA
tacgcatcagtttattcaaaatcttacttttttgttttcgattaaacttgaacagGATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAG
atcttac putative branch site (score: 3)
tttattcaaaatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttttcgccgttctatcgagtatatggtagaaattacgcatcagtttattcaaaatcttacttttttgttttcgattaaacttgaacagGATAAGCTAAAGCTTGGAACTTCTGCTTCGAACCCGTTCCTAAAAGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG