1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgcagctctccttgttctagttcatagttcctagagaaagttttgatcgttagacagatttgactgtttgaatctttaacatgatgattgaattcttgcagTGTTATCTGCGCATAGCGATCCAAAGTATGTGATGAAAGGAGTCAAGCACGGTGCCTGTGATTATCTGCTTAAACCGGTTCGAATTGAGGAGCTTAAGAA
species | Arabidopsis thaliana |
transcript | AT4G31920.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTTCAAGCTGCTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAA TGTTATCTGCGCATAGCGATCCAAAGTATGTGATGAAAGEST: gi|19875220|gb|AU236051.1|AU236051
genomic: TTTCAAGCTGCTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAAgtatgcagct ... attcttgcagTGTTATCTGCGCATAGCGATCCAAAGTATGTGATGAAAG
EST: TTTCAAGCTGCTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAA TGTTATCTGCGCATAGCGATCCAAAGTATGTGATGAAAGGAGTCAAGCACGEST: gi|86063782|gb|DR359539.1|DR359539
genomic: TTTCAAGCTGCTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAAgtatgcagct ... attcttgcagTGTTATCTGCGCATAGCGATCCAAAGTATGTGATGAAAGGAGTCAAGCACG
EST: TTTCAAGCTGCTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAA TGTTATCTGCGCATAGCGATCCAAAGTATGTGATGAAAGGAGTCAAGCACG
genomic: TTTCAAGCTGCTTGAGCTTGTTGGTCTTGAAATGGACTTACCTGTCATAAgtatgcagct ... attcttgcagTGTTATCTGCGCATAGCGATCCAAAGTATGTGATGAAAGGAGTCAAGCACG
tcgttagacagatttgactgtttgaatctttaacatgatgattgaattcttgcagTGTTATCTGCGCATAGCGATCCAAAGTATGTGATGAAAGGAGTCAAGCACGGTGCCTGTGATTATCTGCTTAAACCGGTTCGAATTGAGGAGCTTAAGAA
ctttaac putative branch site (score: 3)
ttcttgc putative PPT
aatctttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcagctctccttgttctagttcatagttcctagagaaagttttgatcgttagacagatttgactgtttgaatctttaacatgatgattgaattcttgcagTGTTATCTGCGCATAGCGATCCAAAGTATGTGATGAAAGGAGTCAAGCACGGTGCCTGTGATTATCTGCTTAAACCGGTTCGAATTGAGGAGCTTAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT