1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagttctttgtatttgcagttacttcaatgaaagaaaataccattttgataatagtgatttctcatatcctttcttttgtttcctttactatggtctatatttgctttagGTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTCAGACATTATACATTACACTCAACACGAGATTGGAAAGGATGCTTGAGAA
species | Arabidopsis thaliana |
transcript | AT4G31170.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACGAAACATAAACTTTCATTTCTTCTAGCTTCTTGATTTGCTCTTAAAG GTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTCEST: gi|86051555|gb|DR347310.1|DR347310
genomic: CACGAAACATAAACTTTCATTTCTTCTAGCTTCTTGATTTGCTCTTAAAGgtaagttctt ... tttgctttagGTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTC
EST: ACGAAACAGAAACTTTCATTTCTTCTAGCTTCTTGAATTT-CTCTTAAAG GTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTCEST: gi|116384332|gb|EG426924.1|EG426924
genomic: ACGAAACATAAACTTTCATTTCTTCTAGCTTCTTG-ATTTGCTCTTAAAGgtaagttctt ... tttgctttagGTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTC
EST: CACGAAACATAAACTTTCATTTCTTCTAGCTTCTTGATTTGCTCTTAAAG GTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTC
genomic: CACGAAACATAAACTTTCATTTCTTCTAGCTTCTTGATTTGCTCTTAAAGgtaagttctt ... tttgctttagGTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTC
tgatttctcatatcctttcttttgtttcctttactatggtctatatttgctttagGTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTCAGACATTATACATTACACTCAACACGAGATTGGAAAGGATGCTTGAGAA
tttgcttt CT-rich tract
tctatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttctttgtatttgcagttacttcaatgaaagaaaataccattttgataatagtgatttctcatatcctttcttttgtttcctttactatggtctatatttgctttagGTGCATGTTGAAGTGATTGAAAGCGATTTACATGTGACTTGCAGCTCGGTCAGACATTATACATTACACTCAACACGAGATTGGAAAGGATGCTTGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG