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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttttcttcaaaatgcttttgatgataagtatccagagcttatatagctaacagtcttccttctacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG

Basic information

species Arabidopsis thaliana
transcript AT4G30220.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164148928|gb|ES032866.1|ES032866
EST:     GGGGAATGGAATACAAAG                         GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
genomic: GGGGAATGGAATACAAAGgtatattttt ... tacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
EST: gi|125309073|gb|EL323158.1|EL323158
EST:     GGGGAAGTGGAATACAAAG                         GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
genomic: GGGGAA-TGGAATACAAAGgtatattttt ... tacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
EST: gi|164027104|gb|ES017576.1|ES017576
EST:     TATCGTCAAGCTTAAATGGGGAATGGAATACAAAG                         GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
genomic: TATCGTCAAGCTTAAATGGGGAATGGAATACAAAGgtatattttt ... tacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
EST: gi|124848527|gb|EH932964.1|EH932964
EST:     CTTAAATGGGGAATGGAATACAAAG                         GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
genomic: CTTAAATGGGGAATGGAATACAAAGgtatattttt ... tacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
EST: gi|19874858|gb|AU235689.1|AU235689
EST:     GACCGGCAAGACTGTTATCGTCAAGCTTAAATGGGGAATGGAATACAAAG                         GTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
genomic: GACCGGCAAGACTGTTATCGTCAAGCTTAAATGGGGAATGGAATACAAAGgtatattttt ... tacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgataagtatccagagcttatatagctaacagtcttccttctacttcacagGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAG
                           agctaac  putative branch site (score: 2)
                                    tcttccttctacttca  putative PPT
                     ttatata  TA-rich tract