1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtacgtctctctgactttttaaatttcaatctataatgtgactgaaaatgcgagcgggaaaaagactgaaacttaatatgattgtggtttaaagttacctttttaaaatatcatttaacgtttctctgatgaaatctattgtttgtgtcatgcgaatgtttcagACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAA
species | Arabidopsis thaliana |
transcript | AT4G29220.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCT ACATATCCAAATCCATTACEST: gi|86060998|gb|DR356755.1|DR356755
genomic: ATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCTgtacgtctct ... aatgtttcagACATATCCAAATCCATTAC
EST: ATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCT ACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAAEST: gi|86060992|gb|DR356749.1|DR356749
genomic: ATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCTgtacgtctct ... aatgtttcagACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAA
EST: ATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCT ACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAAEST: gi|86060994|gb|DR356751.1|DR356751
genomic: ATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCTgtacgtctct ... aatgtttcagACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAA
EST: ATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCT ACATATCCAAATCCATTACAAGACAATGCAGEST: gi|86060996|gb|DR356753.1|DR356753
genomic: ATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCTgtacgtctct ... aatgtttcagACATATCCAAATCCATTACAAGACAATGCAG
EST: ATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCT ACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAA
genomic: ATATTCTTGAAGACGTTCCTCATTTCTCCGACGACTTTCCTGATCATCCTgtacgtctct ... aatgtttcagACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAA
atcatttaacgtttctctgatgaaatctattgtttgtgtcatgcgaatgtttcagACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAA
aaatctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtctctctgactttttaaatttcaatctataatgtgactgaaaatgcgagcgggaaaaagactgaaacttaatatgattgtggtttaaagttacctttttaaaatatcatttaacgtttctctgatgaaatctattgtttgtgtcatgcgaatgtttcagACATATCCAAATCCATTACAAGACAATGCAGCTTACTCTGTTGTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT