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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaggttattaccttttccaatgatactataatgttgtgtgttggacggaaacataaaagctatagtacattattcagGTGAGAGATGAAATCGAACATTTCTTAGATGACAAGGAAGACATGGAAGACTTATACTTAACGAGGAAATGGATTCAAAACCAACAAACCGAGGCAGCAT

Basic information

species Arabidopsis thaliana
transcript AT4G28580.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G28580.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA05G30180.1 (Glycine max), 3'ss of exon 2
-----------------gtaaaaggttattaccttttccaatgatactataatgttgtgtgttggacgga---aacataaaagctatagtacattatt-cagGTGAGAGATGAAATCGAACATTTCTTAGATGACAAGGAAGACATGGAAGACTTATACTTAACGAGGAAATGGATTCAAAACCAACAAACCGAGGCAGCAT
                 | |   |||| ||||||| |    |||   |  | |  |   | || ||   |    || ||||   |||    |  | |  |||||| |||||||||| |||||| | ||||||||||| ||||| |||| | |  |||| || |||||||| ||| | || || ||||||   ||||  ||  
tatatagaaaatttattgcaggcggtt-ttaccttgtatg-tgacgatgcattccttcatctttgagatatcatacttaaagtgtatgaccctctttcacagGTGCGAGATGAAATTGAACATCTGTTAGATGACAACGAAGATATGGCACAACTATATTTGACGAGGAAGTGGTTACAGAATCAACAATTTGAGGAGGCTC

upper sequence: AT4G28580.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G13340.2 (Glycine max), 3'ss of exon 2
-------------gtaaaaggttattaccttttcca-atgatactataatgtt-gtgtgttggacgg-aaacataaaagctatagtacattatt---cagGTGAGAGATGAAATCGAACATTTCTTAGATGACAAGGAAGACATGGAAGACTTATACTTAACGAGGAAATGGATTCAAAACCAACAAACCGAGGCAGCAT
              |   ||| ||||     ||  |   |||  |  |    |  | | |  ||    | || ||| |  | ||  ||  | ||   |||||| |||||||||| |||||| | ||||||||||| ||||| |||| | |  |||| || || ||||| ||| | || || ||||||   ||||  ||  
agatcgaaaaattattgcaggctattttaccttgtatgcgatgatgcatccctcatctttgagatatcatacttaagaagtctatgaccctctttcacagGTGCGAGATGAAATTGAACATCTGTTAGATGACAATGAAGATATGGCACAACTATATTTGACAAGGAAGTGGTTGCAGAATCAACAATTTGAGGAGGCTC

upper sequence: AT4G28580.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv12s0034g02550.t01 (Vitis vinifera), 3'ss of exon 2
---------------------gtaaaaggttattaccttttccaatg-atactata-atgttgtgtgttggacggaaacataaaagctatagtacattattcagGTGAGAGATGAAATCGAACATTTCTTAGATGACAAGGAAGACATGGAAGACTTATACTTAACGAGGAAATGGATTCAAAACCAACAAACCGAGGCAGCAT
                      || ||  ||   |  ||| |   || ||  | || || ||||   ||    |   |   || | ||   || || | | |||||||| |||||| | |||||  | ||||||||||| || ||||||| ||| ||||||||||| ||||| ||||| || || || ||||  |||||    |
aaaaaacaagcatatttgaccttagaatattgcaaattttgctgctgcatcatctacatattgtaactttattgaggaaggaatatct---gttcaatgt-cagGTGAGGGATGAACTTGAACACCTTTTAGATGACAATGAGGACATGGCAGATTTATACTTAACAAGGAAGTGGATCCAGAATCAGCAAAATGAGGCTTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactataatgttgtgtgttggacggaaacataaaagctatagtacattattcagGTGAGAGATGAAATCGAACATTTCTTAGATGACAAGGAAGACATGGAAGACTTATACTTAACGAGGAAATGGATTCAAAACCAACAAACCGAGGCAGCAT
                                      tatagtacattatt  TA-rich tract