1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cctgagactgattagtcatgaaattttgttgttctcgttgagcgtaaaaacagtcttcttaattcacaagtatgtagcttgtaaccttgttattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGTGCTCGACCTTACCTTGTTGAGAGTACATCCGGAA
species | Arabidopsis thaliana |
transcript | AT4G28510.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047137|gb|DR342892.1|DR342892
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047139|gb|DR342894.1|DR342894
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047148|gb|DR342903.1|DR342903
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047134|gb|DR342889.1|DR342889
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047147|gb|DR342902.1|DR342902
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047144|gb|DR342899.1|DR342899
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047138|gb|DR342893.1|DR342893
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047143|gb|DR342898.1|DR342898
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047141|gb|DR342896.1|DR342896
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047140|gb|DR342895.1|DR342895
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047152|gb|DR342907.1|DR342907
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047135|gb|DR342890.1|DR342890
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047150|gb|DR342905.1|DR342905
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047145|gb|DR342900.1|DR342900
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACC-TGAGGGTACACACCTTATGATTCCTTGGTTTGAAARGCCGGTCEST: gi|86047149|gb|DR342904.1|DR342904
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCEST: gi|86047151|gb|DR342906.1|DR342906
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
EST: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAG GTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
genomic: GAGGACATCGAGCCATCATGTTCAATCGTTTAGTCGGTATTAAAGATAAGgttagtcagt ... tattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTC
aaaaacagtcttcttaattcacaagtatgtagcttgtaaccttgttattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGTGCTCGACCTTACCTTGTTGAGAGTACATCCGGAA
ttgtaac putative branch site (score: 2)
ccttgtt CT-rich tract
ttcttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgagactgattagtcatgaaattttgttgttctcgttgagcgtaaaaacagtcttcttaattcacaagtatgtagcttgtaaccttgttattacgcagGTTTACCCTGAGGGTACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGTGCTCGACCTTACCTTGTTGAGAGTACATCCGGAA
- - - - - - - - catgaaa
- - - - - - - - - - - - - - - - - - - - - - taaaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcaca