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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgattgattcctttttcctcgtgtgcaattcaaatgcttagctgaaatttgatttttgtcctgtgggtgttggcaacttaaattgagggtagATGGTGGCAGAGGACTCTGATGATCTCTGGTATGCTTATAACTTGATTGCTGTGGGCGATAGTGTAATGGCTGTCACTTTCAG

Basic information

species Arabidopsis thaliana
transcript AT4G27650.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G27650.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA10G31310.1 (Glycine max), 3'ss of exon 1
gtttgattgattcctttttcctcgtgtgcaattcaaatgct-tag---ctga--aatttgatttttgtcctgtgggtgttggcaacttaaattgagggtagATGGTGGCAGAGGACTCTGATGATCTCTGGTATGCTTATAACTTGATTGCTGTGGGCGATAGTGTAATGGCTGTCACTTTCAG
                         ||||||||| ||| || |||    |||    ||| ||||||    |     |||||   ||    || |   | |||||||||||| ||| || ||||||||||||| ||| ||||||||||| |||   || ||   ||| ||||| || ||| ||||
-------------------------gtgcaattccaattctatagactttgattcgtttaatttttccgttaaatttgttgcttacgattatggcatgcagATGGTGGCAGTGGATTCGGATGATCTCTGGTTTGCGTATAACTTGATAGCTCCCGGAGACTCTGTCATGGCCGTTACTGTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116486625|gb|EG529217.1|EG529217
EST:     TGAAGATCGTTCGCAGGGATTTTGTTCGTAATGGACCCGGAAGCGTTAAG                         ATGGTGGCAGA
genomic: TGAAGATCGTTCGCAGGGATTTTGTTCGTAATGGACCCGGAAGCGTTAAGgtttgattga ... ttgagggtagATGGTGGCAGA
EST: gi|86072170|gb|DR367927.1|DR367927
EST:     TGAAGATCGTTCGCAGGGATTTTGTTCGTAATGGACCCGGAAGCGTTAAG                         ATGGTGGCAGAGGACTCTGATGATCTCTGGTATGCTTATAACTTGATTGCT
genomic: TGAAGATCGTTCGCAGGGATTTTGTTCGTAATGGACCCGGAAGCGTTAAGgtttgattga ... ttgagggtagATGGTGGCAGAGGACTCTGATGATCTCTGGTATGCTTATAACTTGATTGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagctgaaatttgatttttgtcctgtgggtgttggcaacttaaattgagggtagATGGTGGCAGAGGACTCTGATGATCTCTGGTATGCTTATAACTTGATTGCTGTGGGCGATAGTGTAATGGCTGTCACTTTCAG
         atttgat  putative branch site (score: 5)
     tgaaatttgattttt  TA-rich tract