1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagattcctaagcatgtcaattacttttttttttttttttttaacattctcaattttcttgagttggtgacgttttcgagattttgttgattagTGCAAGACGACAAGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTTGTTGATAACTGCTGTCTAAAGAGTTCGTTCCCTTGAGAGATTCTGACTC
species | Arabidopsis thaliana |
transcript | AT4G27040.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGTTTGAGCTTATTCCTTTTGATTCTGCCCGGCTCTCTGATTTTTTAAG TGCAAGACGACAAGTGATGAAAAGATAGAGACCAAGAAAGGCTTCAAGTTTEST: gi|116404418|gb|EG447010.1|EG447010
genomic: AAGTTTGAGCTTATTCCTTTTGATTCTGCCCGGCTCTCTGATTTTTTAAGgtgagattcc ... tgttgattagTGCAAGACGACAAGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTT
EST: AAGTTTGAGCTTATTCCTTTTGATTCTGCCCGGCTCTCTGATTTTTTAAG TGCAAGACGACAAGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTTEST: gi|116404396|gb|EG446988.1|EG446988
genomic: AAGTTTGAGCTTATTCCTTTTGATTCTGCCCGGCTCTCTGATTTTTTAAGgtgagattcc ... tgttgattagTGCAAGACGACAAGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTT
EST: GCCCGGCTCTCTGATTTTTTAAG TGCAAGACGACAGGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTT
genomic: GCCCGGCTCTCTGATTTTTTAAGgtgagattcc ... tgttgattagTGCAAGACGACAAGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTT
tttaacattctcaattttcttgagttggtgacgttttcgagattttgttgattagTGCAAGACGACAAGTGATGAAAAGATAGAGACAAAGAAAGGCTTCAAGTTTGTTGATAACTGCTGTCTAAAGAGTTCGTTCCCTTGAGAGATTCTGACTC
ttttaac putative branch site (score: 2)
ttttgtt putative PPT
aattttctt TA-rich tract