1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagtttctaatttaggtgaattgatagtcatgagcactagaggagtttttgattcctgagtttcatagcattatttctgtttatcagAAGGGTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGTCCAGATGCAATTCA
species | Arabidopsis thaliana |
transcript | AT4G26940.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAA AAGGGTTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGEST: gi|116483920|gb|EG526512.1|EG526512
genomic: CATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAAgtaagtttct ... tgtttatcagAAGGGTTT-AAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAG
EST: CATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAA AAGGGTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGTEST: gi|116459773|gb|EG502365.1|EG502365
genomic: CATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAAgtaagtttct ... tgtttatcagAAGGGTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGT
EST: CATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAA AAGGGTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGTEST: gi|116459771|gb|EG502363.1|EG502363
genomic: CATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAAgtaagtttct ... tgtttatcagAAGGGTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGT
EST: CATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAA AAGGGTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGTEST: gi|86052774|gb|DR348531.1|DR348531
genomic: CATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAAgtaagtttct ... tgtttatcagAAGGGTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGT
EST: CATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAA A-GGGTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGT
genomic: CATCAGATGAACGGCTGCGGTTAGAGTCTGAGGACTGTGATTCATCAAAAgtaagtttct ... tgtttatcagAAGGGTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGT
agcactagaggagtttttgattcctgagtttcatagcattatttctgtttatcagAAGGGTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGTCCAGATGCAATTCA
ttttgat putative branch site (score: 4)
tttctgttt putative PPT
attatttctgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttctaatttaggtgaattgatagtcatgagcactagaggagtttttgattcctgagtttcatagcattatttctgtttatcagAAGGGTTTAAAGCGTGAATCGAAAGACATCCTTGGAGATGTTTACAAGAGTCCAGATGCAATTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG