1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtctgacttttatccccatctttaatattgaattaggggtttagtgaaagtgaaagtcgtttaatccaatgtttgcagCTGGAGTCCCAAATTTGGCAATGGTTCATGGTGTGGATGGAGAAAAG
species | Arabidopsis thaliana |
transcript | AT4G26860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GT-GCATTTCGT-GGGCATTTACAGAGCAACAAAGCCAAAACGCTATTGA CTGGAGTCCCAAATTTGGCAATGGTTCATGGTGTGGATGGAGAAAAGEST: gi|116472743|gb|EG515335.1|EG515335
genomic: GTGGCATTTCGTGGGGCATTTACAGAGCAACAAAGCCAAAACGCTATTGAgtctgacttt ... atgtttgcagCTGGAGTCCCAAATTTGGCAATGGTTCATGGTGTGGATGGAGAAAAG
EST: GGGCATTTACAGAGCAACAAAGCCAAAACGCTATTGA CTGGAGTCCCAAATTTGGCAATGGTTCATGGTGTGGATGGAGAAAAG
genomic: GGGCATTTACAGAGCAACAAAGCCAAAACGCTATTGAgtctgacttt ... atgtttgcagCTGGAGTCCCAAATTTGGCAATGGTTCATGGTGTGGATGGAGAAAAG
aatattgaattaggggtttagtgaaagtgaaagtcgtttaatccaatgtttgcagCTGGAGTCCCAAATTTGGCAATGGTTCATGGTGTGGATGGAGAAAAG
gtttaat putative branch site (score: 4)
tttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgacttttatccccatctttaatattgaattaggggtttagtgaaagtgaaagtcgtttaatccaatgtttgcagCTGGAGTCCCAAATTTGGCAATGGTTCATGGTGTGGATGGAGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA