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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaccacttccttgcgtaagtatctatattccaagtaatgtaccaaaacgcgaaacgcaaaaacaaaacgcagATCGCTGGAAGAGCTGAACGCCAACTTCAACGAGCTTACAAGGCTCCCAGACGCGATAGGGTTTGAGCTAACGAATCTGACGAAGCTCTCCGTCAACTCA

Basic information

species Arabidopsis thaliana
transcript AT4G26050.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26050.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os04g51580.1 (Oryza sativa), 3'ss of exon 3
------------------gtaagaccacttccttgcgt--aagtatctatattccaagtaatgtaccaaaacgcgaa----acgcaaaaacaaaacgcagATCGCTGGAAGAGCTGAACGCCAACTTCAACGAGCTTACAAGGCTCCCAGACGCGATAGGGTTTGAGCTAACGAATCTGACGAAGCTCTCCGTCAACTCA
                  |||   | | |||  | | |  || |   |    |  ||    |||     || |  |       | |   ||     ||||  ||||||| |||||| ||||||||||||||||||| || | ||| || ||| || | ||||| |||||    |  ||   |||||| || || ||||| 
aaacagagggagtactaagtatttctaattcagtacatagaaatgcttgatgttaaaacggtgtttactaatgttagttttttgaattgacgtgtggcagTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGACACGCTGGGGTTCGAGCTGCACAGCCTCCGGAAGCTGTCGGTGAACTCC

upper sequence: AT4G26050.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G072518_T01 (Zea mays), 3'ss of exon 2
--------------------------------gtaagaccacttccttgcgtaagtatctatattccaagtaatgtaccaaaacgcgaaacgcaaaaacaaaacgcagATCGCTGGAAGAGCTGAACGCCAACTTCAACGAGCTTACAAGGCTCCCAGACGCGATAGGGTTTGAGCTAACGAATCTGACGAAGCTCTCCGTCAACTCA
                                | |      || |  ||| | | |  ||   || |    | ||    |  ||| || ||            |  ||  ||||||| ||||||||||||||||||||| |||| || ||||| || ||| || | || || |||||       ||   |  ||| ||||||||||| 
gtaactatataacacatgcatgcatgcatgccgcatatgagctgcactgcttcactcactggcttgctgtgagtgc-tgactacgtgagacatgtgtgtgtgcc--agTGCGCTGGAGGAGCTGAACGCCAACTTCAACCAGCTGACGAGGCTGCCGGACACGCTGGGCTTCGAGCTCCACGGCCTCCGGCGGCTGTCCGTCAACTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtatctatattccaagtaatgtaccaaaacgcgaaacgcaaaaacaaaacgcagATCGCTGGAAGAGCTGAACGCCAACTTCAACGAGCTTACAAGGCTCCCAGACGCGATAGGGTTTGAGCTAACGAATCTGACGAAGCTCTCCGTCAACTCA
                                        aaaaacaaaa  TA-rich tract