1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atataactgttgagggatttattatctagtactgtactcagttgtctagagaaagaatttgtgtggatactaaatgatcatatcttactgggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCTGCAAGTGATTAAGCTCATGCAGAGTTTCAAGTC
species | Arabidopsis thaliana |
transcript | AT4G25740.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCEST: gi|86053984|gb|DR349741.1|DR349741
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCC
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|152035849|gb|BP863154.2|BP863154
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTAAGCTTGGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053897|gb|DR349654.1|DR349654
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053987|gb|DR349744.1|DR349744
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|125016060|gb|EL088329.1|EL088329
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTEST: gi|86053948|gb|DR349705.1|DR349705
genomic: ATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCT
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053923|gb|DR349680.1|DR349680
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053992|gb|DR349749.1|DR349749
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053966|gb|DR349723.1|DR349723
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053903|gb|DR349660.1|DR349660
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGSAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|152034625|gb|BP833134.2|BP833134
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053938|gb|DR349695.1|DR349695
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053905|gb|DR349662.1|DR349662
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|152033879|gb|BP818939.2|BP818939
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053975|gb|DR349732.1|DR349732
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053955|gb|DR349712.1|DR349712
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053953|gb|DR349710.1|DR349710
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053959|gb|DR349716.1|DR349716
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053960|gb|DR349717.1|DR349717
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|124832633|gb|EH917072.1|EH917072
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATCGCAGAGAGATCTGCAAATACCTTTTCAAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTEST: gi|86053899|gb|DR349656.1|DR349656
genomic: ATCGCAGAGAGATCTGCAAATACCTTTTC-AAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCT
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGAEST: gi|86053909|gb|DR349666.1|DR349666
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
EST: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAG AGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
genomic: ATTATCTCAGAGAACAATCGCAGAGAGATCTGCAAATACCTTTTCAAAGgtttgtgagt ... ggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGA
ctagagaaagaatttgtgtggatactaaatgatcatatcttactgggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCTGCAAGTGATTAAGCTCATGCAGAGTTTCAAGTC
aaagaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atataactgttgagggatttattatctagtactgtactcagttgtctagagaaagaatttgtgtggatactaaatgatcatatcttactgggtttcgtagAGGGAGTATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCTGCAAGTGATTAAGCTCATGCAGAGTTTCAAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA