Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagattcttcattttcactgatttatcgggtttaccctcagttttgatcttactaagaggtgatttgttactgtttttttatgcagTCGGATCAAACATACTATGTGATTGATATGGTTTGTTGGAGAGGTTACTCGCTTTATGAATGCACATCAGAGTTCAGGTTCTTTTGGTTGCAATCGAAAC

Basic information

species Arabidopsis thaliana
transcript AT4G24880.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaccctcagttttgatcttactaagaggtgatttgttactgtttttttatgcagTCGGATCAAACATACTATGTGATTGATATGGTTTGTTGGAGAGGTTACTCGCTTTATGAATGCACATCAGAGTTCAGGTTCTTTTGGTTGCAATCGAAAC
               atcttac  putative branch site (score: 3)
                                       ctgttttttt  putative PPT
                                    ttactgtttttttat  TA-rich tract