1 5' 3' | 2 5' 3' | 3 5' 3' |
...tgtttttgggaaatgagttgagttggggattctctaacatttgattctgtctgtgagaacattgctgaatatctgtgttggtattttcattgtgtttcagGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCACGTCCAGAACGTGCGCCTCGGGTATATGAACCTGCATTCAGAGTATATG
species | Arabidopsis thaliana |
transcript | AT4G24770.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCTGTGGACGAAGCTGAGACGGCTGTGGAGAAGTTCAACCGTTAT GATCTTAACGGACGEST: gi|125323699|gb|EL337781.1|EL337781
genomic: TTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTATgtaagtttat ... tgtgtttcagGATCTTAACGGACG
EST: ACAGCTGTGGAGAAGTTCAACCGTTAT GATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCAEST: gi|125315266|gb|EL329351.1|EL329351
genomic: ACAGCTGTGGAGAAGTTCAACCGTTATgtaagtttat ... tgtgtttcagGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCA
EST: CTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTAT GATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCAEST: gi|124944213|gb|EL020334.1|EL020334
genomic: CTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTATgtaagtttat ... tgtgtttcagGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCA
EST: GAGAAGTTCAACCGTTAT GATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAAGAGGATCEST: gi|86087405|gb|DR383164.1|DR383164
genomic: GAGAAGTTCAACCGTTATgtaagtttat ... tgtgtttcagGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAA-GAGGATC
EST: TGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTAT GATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCAEST: gi|124892474|gb|EH971376.1|EH971376
genomic: TGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTATgtaagtttat ... tgtgtttcagGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCA
EST: TGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTAT GATCTTAACGGACGTCTACTAAEST: gi|124710564|gb|EH801966.1|EH801966
genomic: TGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTATgtaagtttat ... tgtgtttcagGATCTTAACGGACGTCTACTAA
EST: TGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTAT GATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCAEST: gi|124993949|gb|EL066218.1|EL066218
genomic: TGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTATgtaagtttat ... tgtgtttcagGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCA
EST: TGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTAT GATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCEST: gi|124709260|gb|EH800662.1|EH800662
genomic: TGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTATgtaagtttat ... tgtgtttcagGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGC
EST: TGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTAT GATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGEST: gi|125001393|gb|EL073662.1|EL073662
genomic: TGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTATgtaagtttat ... tgtgtttcagGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAG
EST: TGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTAT GATCTTAACGGACGTCTACTAACTGTAAACAAGG
genomic: TGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTATgtaagtttat ... tgtgtttcagGATCTTAACGGACGTCTACTAACTGTAAACAAGG
tctgtctgtgagaacattgctgaatatctgtgttggtattttcattgtgtttcagGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCACGTCCAGAACGTGCGCCTCGGGTATATGAACCTGCATTCAGAGTATATG
ttttcatt CT-rich tract
tattttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtttttgggaaatgagttgagttggggattctctaacatttgattctgtctgtgagaacattgctgaatatctgtgttggtattttcattgtgtttcagGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCACGTCCAGAACGTGCGCCTCGGGTATATGAACCTGCATTCAGAGTATATG
-gtttttg
- - - - - - - - - - - - - - - -ctctaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - gagaaca