Sequence
atgc intronic sequence ATGC exonic sequence...atgaaaatcacatcaattatggaattcagttaggtttgtgtcctgtgccttgcaatgaacagtaatccagttctgatccttgcattataactttgaacagGATCATTATGTAGTGAGTATCAGGCACAGACCAATCATGGTGGCTTTCATGCAGCTCATTATGAACCAAGAGGGATGGCACATCTTTCACCCTCACACAG
Basic information
species | Arabidopsis thaliana |
transcript | AT4G24500.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86059064|gb|DR354821.1|DR354821EST: TCAAGGAAGCTCTCCTGTACCACCTCAGTTTCCACCATCAGTTCCTCCAG GATCATTATGTAGTGAGTATCAGGCACAGACCAATCATGGTGGCTTTCATG
genomic: TCAAGGAAGCTCTCCTGTACCACCTCAGTTTCCACCATCAGTTCCTCCAGgtgcttgttt ... ctttgaacagGATCATTATGTAGTGAGTATCAGGCACAGACCAATCATGGTGGCTTTCATG
EST:
gi|125027900|gb|EL100169.1|EL100169EST: TCAAGGAAGCTCTCCTGTACCACCTCAGTTTCCACCATCAGTTCCTCCAG GATACATTATGTAGTGAGTATCAGGCA
genomic: TCAAGGAAGCTCTCCTGTACCACCTCAGTTTCCACCATCAGTTCCTCCAGgtgcttgttt ... ctttgaacagGAT-CATTATGTAGTGAGTATCAGGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgccttgcaatgaacagtaatccagttctgatccttgcattataactttgaacagGATCATTATGTAGTGAGTATCAGGCACAGACCAATCATGGTGGCTTTCATGCAGCTCATTATGAACCAAGAGGGATGGCACATCTTTCACCCTCACACAG
ttataac putative branch site (score: 2)
attataactttgaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgaaaatcacatcaattatggaattcagttaggtttgtgtcctgtgccttgcaatgaacagtaatccagttctgatccttgcattataactttgaacagGATCATTATGTAGTGAGTATCAGGCACAGACCAATCATGGTGGCTTTCATGCAGCTCATTATGAACCAAGAGGGATGGCACATCTTTCACCCTCACACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG