1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gttagtgttctgttagtttcacggtagaactttcgcttggattgcttgaatcttgccttattcgaattcgtttgatcgacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTTTGAGTTCCAAGCTGAGGTTTCTCGGCTTATGGACATTATTATCAACTCT
species | Arabidopsis thaliana |
transcript | AT4G24190.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAGCTTCATAG AGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTEST: gi|124768573|gb|EH858703.1|EH858703
genomic: AAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAG-TTCATAGgttagtgttc ... tgatcgacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGT
EST: CGGTGGTTTATCGACGGATTCCGATGTAGTTCATAG AGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTTEST: gi|152034362|gb|BP826264.2|BP826264
genomic: CGGTGGTTTATCGACGGATTCCGATGTAGTTCATAGgttagtgttc ... tgatcgacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTT
EST: AAAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAGTTCATAG AGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTTEST: gi|125094809|gb|EL152179.1|EL152179
genomic: AAAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAGTTCATAGgttagtgttc ... tgatcgacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTT
EST: AAAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAGTTCATAG AGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACEST: gi|164144500|gb|ES029331.1|ES029331
genomic: AAAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAGTTCATAGgttagtgttc ... tgatcgacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAAC
EST: AAATTGGTGGTCACGGTTGGTTTATCGACGGATTCCGATGTAGTTCATAG AGAGTCTGAGTCGATGTCAAAGAAGACGCTTCEST: gi|116483054|gb|EG525646.1|EG525646
genomic: AAATTGGTGGTCACGG-TGGTTTATCGACGGATTCCGATGTAGTTCATAGgttagtgttc ... tgatcgacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTC
EST: AAAATTGATGGTCACGGTGGTTTATCGACGGATTCCGATGTAGTTCATAG AGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTTEST: gi|125248324|gb|EL262409.1|EL262409
genomic: AAAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAGTTCATAGgttagtgttc ... tgatcgacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTT
EST: AAAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAGTTCATAG AGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGEST: gi|125035299|gb|EL107568.1|EL107568
genomic: AAAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAGTTCATAGgttagtgttc ... tgatcgacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACG
EST: AAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAAGTTCATAG AGAGTCTGAGTCGATEST: gi|125114125|gb|EL164679.1|EL164679
genomic: AAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTA-GTTCATAGgttagtgttc ... tgatcgacagAGAGTCTGAGTCGAT
EST: AAAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAGTTCATAG AGAGTCTGAGTACGATGTCAAAGAAGACGCTTCGCAGTAAC
genomic: AAAATTGGTGGTCACGGTGGTTTATCGACGGATTCCGATGTAGTTCATAGgttagtgttc ... tgatcgacagAGAGTCTGAGT-CGATGTCAAAGAAGACGCTTCGCAGTAAC
aactttcgcttggattgcttgaatcttgccttattcgaattcgtttgatcgacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTTTGAGTTCCAAGCTGAGGTTTCTCGGCTTATGGACATTATTATCAACTCT
gtttgat putative branch site (score: 5)
ttcgttt CT-rich tract
ttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgttctgttagtttcacggtagaactttcgcttggattgcttgaatcttgccttattcgaattcgtttgatcgacagAGAGTCTGAGTCGATGTCAAAGAAGACGCTTCGCAGTAACGCGGAGAAGTTTGAGTTCCAAGCTGAGGTTTCTCGGCTTATGGACATTATTATCAACTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA