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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacacttgcttgcttttaacatatctttgtttcgactttttttacttttcaagttcttgagaaactcatttttgtttggggtctctccagATTGAAGAACCGGTTGAAGTATACCATGACATGGAGTACAAATCAAAACGTTGGCATTTCCCTTTACATAACCTTACTGTATCCAACATATGGTCGCCAT

Basic information

species Arabidopsis thaliana
transcript AT4G23790.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125154158|gb|EL184913.1|EL184913
EST:     ACTCCATATCTCGTAACCACGTCGAATCACTGCTTTGTATGCTCTCTACG                         ATTGAAGAAACCGGTTGAAGTATACCATGACATGGAG
genomic: ACTCCATATCTCGTAACCACGTCGAATCACTGCTTTGTATGCTCTCTACGgtataacact ... gtctctccagATTGAAGAA-CCGGTTGAAGTATACCATGACATGGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttttttacttttcaagttcttgagaaactcatttttgtttggggtctctccagATTGAAGAACCGGTTGAAGTATACCATGACATGGAGTACAAATCAAAACGTTGGCATTTCCCTTTACATAACCTTACTGTATCCAACATATGGTCGCCAT
                                              tctctcc  CT-rich tract
                                atttttgttt  TA-rich tract