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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcattaggagtttgacattgtatgatttgtgtatctctttgggtctgatatgtttagcatacatatggaaatgtcttgtttcttcttcttctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G23470.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038887|gb|DR334642.1|DR334642
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|125155619|gb|EL185640.1|EL185640
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAA
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAA
EST: gi|164100865|gb|EL971397.1|EL971397
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACG
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACG
EST: gi|86038885|gb|DR334640.1|DR334640
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGCAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTG-TGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATG-AT
EST: gi|116434599|gb|EG477191.1|EG477191
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|86038879|gb|DR334634.1|DR334634
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|301501098|gb|HO206638.1|HO206638
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|86038889|gb|DR334644.1|DR334644
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|164099037|gb|ES174355.1|ES174355
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGTCGCTTTACGATGATA
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTG-CGCTTTACGATGATA
EST: gi|86038878|gb|DR334633.1|DR334633
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|86038880|gb|DR334635.1|DR334635
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|86038886|gb|DR334641.1|DR334641
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|86038882|gb|DR334637.1|DR334637
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|86038888|gb|DR334643.1|DR334643
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|301502433|gb|HO207973.1|HO207973
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|86038883|gb|DR334638.1|DR334638
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGYCCCTTGTGYATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|86038877|gb|DR334632.1|DR334632
EST:     TTATTGTTGCTTCNNNGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATA
genomic: TTATTGTTGCTTCGC-GTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATA
EST: gi|86038881|gb|DR334636.1|DR334636
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCA-GCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
EST: gi|125267952|gb|EL282037.1|EL282037
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTACGCAAGCGTGCGCTTTACGATGAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTT-CGCAAGCGTGCGCTTTACGATGAT
EST: gi|116434598|gb|EG477190.1|EG477190
EST:     CTTATTGTTGCTTCGCGTTGTGGTG                         TGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT
genomic: CTTATTGTTGCTTCGCGTTGTGGTGgtaagtttcg ... ctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatatgtttagcatacatatggaaatgtcttgtttcttcttcttctcattgcagTGCCCCTTGTGCATCATACTTGCTTCGCAAGCGTGCGCTTTACGATGATATGTCAAG
 gtctgat  putative branch site (score: 4)
                          tgtcttgtttcttctt  putative PPT
             atacatat  TA-rich tract