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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattattgtgtgtttctattgaccaattgatagggtttttgtgtttgtcagcacctttgggattatgttttgttgaatttctctgttgtgtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G21790.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86038980|gb|DR334735.1|DR334735
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|301502535|gb|HO208075.1|HO208075
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|86038985|gb|DR334740.1|DR334740
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|86038987|gb|DR334742.1|DR334742
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|86038988|gb|DR334743.1|DR334743
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         GTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|124909554|gb|EH983634.1|EH983634
EST:     TTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: TTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|86038990|gb|DR334745.1|DR334745
EST:     TTGGACTACTCANAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTTGGATTTCACATGCAAGTATTTCTTG
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTT-GGATTTCACATGCAAGTATTTCTTG
EST: gi|86038984|gb|DR334739.1|DR334739
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|125295009|gb|EL309094.1|EL309094
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACA
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACA
EST: gi|116408117|gb|EG450709.1|EG450709
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|86038989|gb|DR334744.1|DR334744
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGGTTCATCC
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTG-CGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTG-TTCATCC
EST: gi|125311321|gb|EL325406.1|EL325406
EST:     CTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: CTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|125308452|gb|EL322537.1|EL322537
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCT
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCT
EST: gi|86038982|gb|DR334737.1|DR334737
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGCTCTGTTTGGATTTCACATGCAAGTATTTCTTG
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTG
EST: gi|86038983|gb|DR334738.1|DR334738
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|116479083|gb|EG521675.1|EG521675
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|86038986|gb|DR334741.1|DR334741
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCA
EST: gi|125071142|gb|EL136299.1|EL136299
EST:     TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG                         TTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTG
genomic: TTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGgtgattattg ... gtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtcagcacctttgggattatgttttgttgaatttctctgttgtgtgtgtgcagTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAG
                 attatgtttt  TA-rich tract