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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctcctctgttttgtttttcctctgctagaaacagagctacacacataattcccctgtttttgaaaacagagcataacgttactttcctctgttttgatctttttttgtttgatcagTACACCTTCAACGTTGCGTTGCTATCGATCTTCGGAAAAGACGAGGTTTTATACAGAGAAGATCTAAAACGATGCTACTACATTCTCGAGAAAGGTTACA

Basic information

species Arabidopsis thaliana
transcript AT4G19230.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G19230.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA09G35250.1 (Glycine max), 3'ss of exon 2
gtaagctcctctgttttgtttttcctctgctagaaacagagctacacacataattcccctgtttttgaaaacagagcataacgttactttcctctgttttgatctttttttgtttgatcagTACACCTTCAACGTTGCGTTGCTATCGATCTTCGGAAAAGACGAGGTTTTATACAGAGAAGATCTAAAACGATGCTACTACATTCTCGAGAAAGGTTACA
                    || ||  |   |     |   |  |     |  ||          | |||| |||        ||||  |  |   |||||   | |  |    ||  |||| |||||||||||||||  |||| || || ||||||||||| ||| || | |||||||| | ||| ||||| |||||||||| ||| ||| |||| || |
-------------------attacccatttcatgtctaattcctcgttggttttttttaacaaaataaaaaaagaaggggcttttacggtttttgattttggggtctcctgtcctg--cagTTCACCTTCAACGTTGCTCTGCTTTCAATTTTCGGAAAAGAAGAGATTCTGTACAGAGATGCTCTGAAACGGTGCTACTACACTCTGGAGCAAGGGTATA

upper sequence: AT4G19230.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA01G35660.2 (Glycine max), 3'ss of exon 1
gtaagctcctctgttttgtttttcctctgctagaaacagagctacacacat--aattcccc--tg--tttttgaaaacagagcataacgttactttcctctgttttgatctttttttgtttgat-cagTACACCTTCAACGTTGCGTTGCTATCGATCTTCGGAAAAGACGAGGTTTTATACAGAGAAGATCTAAAACGATGCTACTACATTCTCGAGAAAGGTTACA
                              ||  || | |  ||| ||  |  |||||| |  ||  ||||| | || | |  | ||  |    ||  |  | ||||   ||||   || |  | |||| |||||||||||||||  |||| || || ||||| ||||| ||| || | |||||||| | ||| ||||| |||||||||| ||| ||| |||| ||||
----------------------------aataataaaaaaattacccatttctaattcctcgttggttttttaagaaaataaaaaaaaatggggtttttacggtttgcgattttggggtctcctgcagTTCACCTTCAACGTTGCTCTGCTTTCAATTTTCGGGAAAGAAGAGATTCTGTACAGAGATGCTCTGAAACGGTGCTACTACACTCTGGAGCAAGGGTACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaacagagcataacgttactttcctctgttttgatctttttttgtttgatcagTACACCTTCAACGTTGCGTTGCTATCGATCTTCGGAAAAGACGAGGTTTTATACAGAGAAGATCTAAAACGATGCTACTACATTCTCGAGAAAGGTTACA
                    ctttcctctgttttga  CT-rich tract
                              ttttgatcttttttt  TA-rich tract