1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatattcaaattgctgatttttgtggtatgagtgcttgaatttggaaaaagtgtagctaatgttttgatttcgttttgcttgttcagAAATGGAAGAAGTATGGTACTCACAGGCTTACTTTCATGGAGCGACATTGTCCTCCTGTGTTTGATAGAAAGCAGTGTCTGGTTCCTCCTCCTGATGGCT
species | Arabidopsis thaliana |
transcript | AT4G19120.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACTCCTTGCACTGATCCAAGG AAATGGAAGAAGTATGGTACTCACAGGCTTACTTTCATGGAGCGACATTGTEST: gi|116410687|gb|EG453279.1|EG453279
genomic: CACTCCTTGCACTGATCCAAGGgtatattcaa ... gcttgttcagAAATGGAAGAAGTATGGTACTCACAGGCTTACTTTCATGGAGCGACATTGT
EST: CGGAATGTAGCAGTGACTACCAAGATTACACTCCTTGCACTGATCCAAGG AAATGGAAGAAGTATGGTACTCACAGGCTTACTTTCATGGAGCGACATTGTEST: gi|116420421|gb|EG463013.1|EG463013
genomic: CGGAATGTAGCAGTGACTACCAAGATTACACTCCTTGCACTGATCCAAGGgtatattcaa ... gcttgttcagAAATGGAAGAAGTATGGTACTCACAGGCTTACTTTCATGGAGCGACATTGT
EST: CGGAATGTAGCAGTGACTACCAAGATTACACTCCTTGCACTGATCCAAGG AAATGGAAGAAGTATGGTACTCACAGACTTACTTTCATGGAGCGACATTGT
genomic: CGGAATGTAGCAGTGACTACCAAGATTACACTCCTTGCACTGATCCAAGGgtatattcaa ... gcttgttcagAAATGGAAGAAGTATGGTACTCACAGGCTTACTTTCATGGAGCGACATTGT
tgcttgaatttggaaaaagtgtagctaatgttttgatttcgttttgcttgttcagAAATGGAAGAAGTATGGTACTCACAGGCTTACTTTCATGGAGCGACATTGTCCTCCTGTGTTTGATAGAAAGCAGTGTCTGGTTCCTCCTCCTGATGGCT
ttttgctt CT-rich tract
taatgttttgattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatattcaaattgctgatttttgtggtatgagtgcttgaatttggaaaaagtgtagctaatgttttgatttcgttttgcttgttcagAAATGGAAGAAGTATGGTACTCACAGGCTTACTTTCATGGAGCGACATTGTCCTCCTGTGTTTGATAGAAAGCAGTGTCTGGTTCCTCCTCCTGATGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC