1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagttactttattctctccatcaaatatttcagtcttgagataagattgtatatatgtattcagatgtgaattcttcaaattgcagAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGAAGTTACTCCTCGTTGAAGACGAAAAGGTTTGGCTTTTGCATCAGATCAA
species | Arabidopsis thaliana |
transcript | AT4G18975.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCA AAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGEST: gi|116393000|gb|EG435592.1|EG435592
genomic: TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCAgtgagttact ... caaattgcagAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACG
EST: TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCA AAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGAEST: gi|116392998|gb|EG435590.1|EG435590
genomic: TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCAgtgagttact ... caaattgcagAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGA
EST: TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCA AAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGAEST: gi|116393001|gb|EG435593.1|EG435593
genomic: TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCAgtgagttact ... caaattgcagAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGA
EST: GCAAGGCTTATCA AAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGAEST: gi|116392999|gb|EG435591.1|EG435591
genomic: GCAAGGCTTATCAgtgagttact ... caaattgcagAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGA
EST: TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCA AAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGA
genomic: TCTGTAACTTGAATCCAACTCAAGGGATATTCCCATTGCAAGGCTTATCAgtgagttact ... caaattgcagAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGA
agtcttgagataagattgtatatatgtattcagatgtgaattcttcaaattgcagAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGAAGTTACTCCTCGTTGAAGACGAAAAGGTTTGGCTTTTGCATCAGATCAA
ttcttc CT-rich tract
ataagattgtatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttactttattctctccatcaaatatttcagtcttgagataagattgtatatatgtattcagatgtgaattcttcaaattgcagAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGTTGCGGAAGTTACTCCTCGTTGAAGACGAAAAGGTTTGGCTTTTGCATCAGATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA