1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...taaataacatgacattgttgaataattctggttttatagtcaacattagaacaataagtttagatttctgaatttgatgtataagattataaatctgcagAAGTTGCTGAAGTGGGAAATCACTGATAAGATGCATAACAGTACTGATAAGATGCAGAATGCAACAACAACCAGTACATGCAAG
species | Arabidopsis thaliana |
transcript | AT4G18530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGTGCTTACTTCATTTGCAATGCTTATCTTGCTAAAGAACTTTAAAGAG AAGTTGCTGAAGTGGGAAATCACEST: gi|116411180|gb|EG453772.1|EG453772
genomic: TGGTGCTTACTTCATTTGCAATGCTTATCTTGCTAAAGA-CTTTAAAGAGgtaaacttct ... aaatctgcagAAGTTGCTGAAGTGGGAAATCAC
EST: GTGGTGCTTACTTCATTTGCAATGCTTATCTTGCTAAAGACTTTAAAGAG AAGTTGCTGAAGTGGGAAATCACTGATAAGATGCATAACAGTACTGATAAG
genomic: GTGGTGCTTACTTCATTTGCAATGCTTATCTTGCTAAAGACTTTAAAGAGgtaaacttct ... aaatctgcagAAGTTGCTGAAGTGGGAAATCACTGATAAGATGCATAACAGTACTGATAAG
ttagaacaataagtttagatttctgaatttgatgtataagattataaatctgcagAAGTTGCTGAAGTGGGAAATCACTGATAAGATGCATAACAGTACTGATAAGATGCAGAATGCAACAACAACCAGTACATGCAAG
atttgat putative branch site (score: 5)
aatttgatgtataaga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaataacatgacattgttgaataattctggttttatagtcaacattagaacaataagtttagatttctgaatttgatgtataagattataaatctgcagAAGTTGCTGAAGTGGGAAATCACTGATAAGATGCATAACAGTACTGATAAGATGCAGAATGCAACAACAACCAGTACATGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- aataaca
- - - - - - - - - - - - - - -ggtttta
- - - - - - - - - - - - - - - - - - - -tcaacat
- - - - - - - - - - - - - - - - - - - - - - - - -aacaata