1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttgactgatattgacctaatggcattgtcacattttatatgagttcattgttgggggagaaggtttcagtatgattcatcgtagcacaataccctcaaacatatgttattgtcactttcagGAGTTCCAGAGAGATATTGTTAAAGCAGCTGAGGCATTTACCACGATCGGGCTCAGACACATTGAAGCAG
species | Arabidopsis thaliana |
transcript | AT4G18060.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGGCATCATCAACTCGATAAACTTTACCGCTCTACTCGTTCTGCAAAG GAGTTCCAGAGAGATATTGTTAAAGCAGCTGAGGCATTTACCACGATCGGGEST: gi|86062573|gb|DR358330.1|DR358330
genomic: AAAGGCATCATCAACTCGATAAACTTTACCGCTCTACTCGTTCTGCAAAGgtttgactga ... tcactttcagGAGTTCCAGAGAGATATTGTTAAAGCAGCTGAGGCATTTACCACGATCGGG
EST: AAAGGCATCATCAACTCGATAAACTTTACCGCTCTACTCGTTCTGCAAAG GAGTTCCAGAGAGATATTGTTAAAGCAGCTGAGGCATTTACCACGATCGGGEST: gi|86086852|gb|DR382611.1|DR382611
genomic: AAAGGCATCATCAACTCGATAAACTTTACCGCTCTACTCGTTCTGCAAAGgtttgactga ... tcactttcagGAGTTCCAGAGAGATATTGTTAAAGCAGCTGAGGCATTTACCACGATCGGG
EST: AAAGGCATCATCAACTCGATAAACTTTACCGCTCTACTCGTTCTGCAAAG GAGTTCCAGAGAGATATTGTTAAAGCAGCTGAGGCATTTACCACGATCGGG
genomic: AAAGGCATCATCAACTCGATAAACTTTACCGCTCTACTCGTTCTGCAAAGgtttgactga ... tcactttcagGAGTTCCAGAGAGATATTGTTAAAGCAGCTGAGGCATTTACCACGATCGGG
cagtatgattcatcgtagcacaataccctcaaacatatgttattgtcactttcagGAGTTCCAGAGAGATATTGTTAAAGCAGCTGAGGCATTTACCACGATCGGGCTCAGACACATTGAAGCAG
tcactttc CT-rich tract
aaacatatgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgactgatattgacctaatggcattgtcacattttatatgagttcattgttgggggagaaggtttcagtatgattcatcgtagcacaataccctcaaacatatgttattgtcactttcagGAGTTCCAGAGAGATATTGTTAAAGCAGCTGAGGCATTTACCACGATCGGGCTCAGACACATTGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC