1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacggtttctattcttcttttattttgactcgtaactcctgcgtcatcatccaattgaatctcaccggtttttctttttacatgcttggtttagTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGAGCAGTTGTCAACATTAGAGGAAAGCAAGAAAGGATATCTATTTGGACTA
species | Arabidopsis thaliana |
transcript | AT4G18040.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGACTATGACTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCTACACT TTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGAEST: gi|116465998|gb|EG508590.1|EG508590
genomic: GGACTATGACTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCTACACTgtacggtttc ... cttggtttagTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGA
EST: GGACTATGACTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCTACACT TTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGAEST: gi|124779196|gb|EH869139.1|EH869139
genomic: GGACTATGACTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCTACACTgtacggtttc ... cttggtttagTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGA
EST: AAGTCTGNTAAGAGCTGGCTCTACACT TTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAAEST: gi|124925985|gb|EL003899.1|EL003899
genomic: AAGTCTGATAAGAGCTGGCTCTACACTgtacggtttc ... cttggtttagTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAA
EST: AAGTCTGATAAGAGCTGGCTCTACACT TTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAAEST: gi|86078198|gb|DR373955.1|DR373955
genomic: AAGTCTGATAAGAGCTGGCTCTACACTgtacggtttc ... cttggtttagTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAA
EST: GGACTATGACTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCTACACT TTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGA
genomic: GGACTATGACTTTCCCTAAGGAGAAGTCTGATAAGAGCTGGCTCTACACTgtacggtttc ... cttggtttagTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGA
tgcgtcatcatccaattgaatctcaccggtttttctttttacatgcttggtttagTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGAGCAGTTGTCAACATTAGAGGAAAGCAAGAAAGGATATCTATTTGGACTA
atctcac putative branch site (score: 3)
tttttctttttacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggtttctattcttcttttattttgactcgtaactcctgcgtcatcatccaattgaatctcaccggtttttctttttacatgcttggtttagTTGCTTGCATTGATTGGAGAGCAGTTTGATCATGGAGATGAAATATGTGGAGCAGTTGTCAACATTAGAGGAAAGCAAGAAAGGATATCTATTTGGACTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA