1 5' 3' | 2 5' 3' | 3 5' 3' |
...cacatgggactgctttcatatctttttcagtctcttattttttgaaaagatggatgttttggatataaagttttgatctttttgttcatgttggggacagGCCAAATGATGGAACAGACTGGGAAACGTCGAGTTTGGTATCAGGTTTTGAGTGGAAACAAATAGCAGAGCCAGTGATGAGACTTTACACTGAGACTACA
species | Arabidopsis thaliana |
transcript | AT4G17770.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATTTTATAAG GCCAAATGATGGAACAGACTGGGAAACGTCGAGTTTGGTATCAGGTTTTGA
genomic: TATTTTATAAGgtaacacttg ... ttggggacagGCCAAATGATGGAACAGACTGGGAAACGTCGAGTTTGGTATCAGGTTTTGA
aaagatggatgttttggatataaagttttgatctttttgttcatgttggggacagGCCAAATGATGGAACAGACTGGGAAACGTCGAGTTTGGTATCAGGTTTTGAGTGGAAACAAATAGCAGAGCCAGTGATGAGACTTTACACTGAGACTACA
ttttgat putative branch site (score: 4)
atataaagttttgatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacatgggactgctttcatatctttttcagtctcttattttttgaaaagatggatgttttggatataaagttttgatctttttgttcatgttggggacagGCCAAATGATGGAACAGACTGGGAAACGTCGAGTTTGGTATCAGGTTTTGAGTGGAAACAAATAGCAGAGCCAGTGATGAGACTTTACACTGAGACTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - -ctgcttt
- - - - - - - - - - - - - - - - - - - - - -gaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gttttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttttga