Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatacattttttttaagccctggatcaaaaaaattgtacttttgtttgatgagttattcactctctgtgttgctgacttctctttattctctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACAC

Basic information

species Arabidopsis thaliana
transcript AT4G17390.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 2
tgatacattttttttaagccctg--gatcaaaaaaattgtacttttgtttgatgagttattcactctctgtgttgctgacttctctttattctctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACAC
 |  | | | | || |    |||  |    |   | || |   | | || |     | || ||     ||||    | |||  | |||   ||   | | |||| | ||| || ||||||||||| ||||| ||||||||  | |||||||||||||| |||||||| || || || || ||||   |||||||  | || |
agccaaaatgtattcacatgctgctgtctgattcacttttgaatgttttggccctataatccaaatattgtgca--taactattttttgaccttgctttcagGGCTATGTGGTTTACCGTGTTCGCGTCAGGCGTGGTGGCAGGAAGAGGCCAGTGCCCAAGGGTATTGTCTATGGCAAGCCCAAGCACCAGGGTATTACCC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 2
tgatacattttttttaagccctggatcaaaaaaattgtacttttgtttgatgagttattcactctctgtgttgctgacttctctttattctctgtatt---agGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACAC
||||   || | ||||     |             | ||  |||  |   ||     || | | |   | ||  |  | | |   | ||  |  | ||   |||| | |||  |||| ||||| || || ||||| |||||| | ||||||||||| || |||||||| ||||| ||||| ||||| ||||| || || || |
tgat--tttctgtttacatttttccctgctggtgctctatatttagtcactgcagcgtt-aatattcatattaatatcgtgtacatgttaacaatcttttcagGGTTATGTGATCTATCGTGTACGTGTAAGACGCGGTGGAAGGAAGAGGCCAGTCCCAAAGGGTATTGTGTATGGTAAGCCCACAAACCAAGGTGTCACTC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 2
tgatacattttttttaagccctggatcaaaaaaattgta--cttttgtttgatgagttattcactctctgtgttgctgacttctctttattctctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACAC
   |  |   || | |    ||||  ||  ||  |  ||  | |      ||||| |  ||     |   |  |  || |    |  |||| ||| | |||||||| |||| |||| |||||||| || ||||||||||| || |||||||| || || ||||| || || || || || || || |||||||| || || |
-tgtttaaaattatgacaaactggcccattaatttgataagcatcaagacgatgattctttttactttgattataatg-ccaaacactattttctattttagGGGTATGTTATCTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTTCCCAAGGGCATTGTTTATGGAAAGCCTACAAACCAGGGTGTCACCC

upper sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 2
--tgatacatttttt--ttaagccctggatcaaaaaaattgtacttttgtttgatgagttattcactctctgtgttgctgacttctctttattctctgtattagGGGTT-TGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACAC
  | ||   | | |   |  ||  |||   |    ||  | ||    ||    ||  |||  |   | |||       ||||  ||||  ||   |||| ||  ||||| |||  | || |||||||| || ||||||||||| || |||||||| ||||| ||||| || || || ||||| ||||| ||||| || || || |
tctaatcactctctcgatccagttctgctgcttgtaatctataagcctgg--aattggttgcta--tatctacacaaatgaca-ctctggatgtactgttttcagGGTTATGTGATTTATCGTGTTCGTGTTAGACGTGGTGGTCGGAAGAGGCCTGTGCCCAAGGGAATTGTTTATGGTAAGCCCACAAACCAAGGTGTTACCC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86021787|gb|DR317540.1|DR317540
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|124929525|gb|EL007062.1|EL007062
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGT
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGT
EST: gi|125222715|gb|EL236800.1|EL236800
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTATAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021781|gb|DR317534.1|DR317534
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|116413476|gb|EG456068.1|EG456068
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|47828590|gb|CK118274.1|CK118274
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|164218970|gb|ES001728.1|ES001728
EST:     CAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: CAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|152033817|gb|BP816755.2|BP816755
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021792|gb|DR317545.1|DR317545
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|125083699|gb|EL144168.1|EL144168
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|116413469|gb|EG456061.1|EG456061
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|47830660|gb|CK120344.1|CK120344
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|116413465|gb|EG456057.1|EG456057
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021793|gb|DR317546.1|DR317546
EST:     GTCCCACTCGTCCCGACDAGGCTCGTCGTCTCGGCTACAAGGCCAAGYAG                         GGTTTTGTTGTCTACCGTGTTCGAGTBAGACGTGGTKGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|116413464|gb|EG456056.1|EG456056
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|125134380|gb|EL175322.1|EL175322
EST:     CTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: CTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|116413474|gb|EG456066.1|EG456066
EST:     GTCCCACTCGTCCCGGCAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTAGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021794|gb|DR317547.1|DR317547
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTAAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|124882960|gb|EH961862.1|EH961862
EST:     CTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: CTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|47830178|gb|CK119862.1|CK119862
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86079048|gb|DR374805.1|DR374805
EST:     GCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021780|gb|DR317533.1|DR317533
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|116413466|gb|EG456058.1|EG456058
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|116413471|gb|EG456063.1|EG456063
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTTTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|116413470|gb|EG456062.1|EG456062
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021784|gb|DR317537.1|DR317537
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|47829380|gb|CK119064.1|CK119064
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021782|gb|DR317535.1|DR317535
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|164032493|gb|ES169080.1|ES169080
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCC
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCC
EST: gi|116413463|gb|EG456055.1|EG456055
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|116413473|gb|EG456065.1|EG456065
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|47829959|gb|CK119643.1|CK119643
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|116413477|gb|EG456069.1|EG456069
EST:     TCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: TCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|116413460|gb|EG456052.1|EG456052
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021779|gb|DR317532.1|DR317532
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021783|gb|DR317536.1|DR317536
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021795|gb|DR317548.1|DR317548
EST:     GTCCCACTCGTCCCGACAARGCTCGTCGTCTCGGATACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021786|gb|DR317539.1|DR317539
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021788|gb|DR317541.1|DR317541
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|47829691|gb|CK119375.1|CK119375
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|152033886|gb|BP819048.2|BP819048
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021785|gb|DR317538.1|DR317538
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|47828126|gb|CK117810.1|CK117810
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|86021790|gb|DR317543.1|DR317543
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|125100532|gb|EL155948.1|EL155948
EST:     CGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: CGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|125239901|gb|EL253986.1|EL253986
EST:     CGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: CGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
EST: gi|47829664|gb|CK119348.1|CK119348
EST:     GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAG                         GGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA
genomic: GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGgtctttttct ... tctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgatgagttattcactctctgtgttgctgacttctctttattctctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACAC
                          tgctgac  putative branch site (score: 2)
                                cttctctttattctct  CT-rich tract
                                    tctttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgatacattttttttaagccctggatcaaaaaaattgtacttttgtttgatgagttattcactctctgtgttgctgacttctctttattctctgtattagGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACAC

- - - - - - - - - - - - - caaaaaa
- - - - - - - - - - - - - - - - - - - - - -tgtttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actctct