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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtaaaaattcctgtagaatgcaattgtagacgctcaattttgatctcaaatcattgtgaagcaagtatcatcttcctggccttgactcttgtttccttccattgactcccttggaaaacagGTTTCAGCTGCTGGTTATGACCGCCAAGGTGTGGCTGACCACGCAAGTAACCTGGCTACCAAAATTAGGAATAATCTCACCAATTCTATGAAGGCACTTG

Basic information

species Arabidopsis thaliana
transcript AT4G16155.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125198637|gb|EL213591.1|EL213591
EST:     AACGAACATCACATGAAGGCTTTTGGTTTGCAG                         GTTTCAGCTGCTGGTTATGACCGCCAAGGTGTGGCTGACCACGCAAGTAAC
genomic: AACGAACATCACATGAAGGCTTTTGGTTTGCAGgtagtaaaaa ... tggaaaacagGTTTCAGCTGCTGGTTATGACCGCCAAGGTGTGGCTGACCACGCAAGTAAC
EST: gi|124976535|gb|EL049945.1|EL049945
EST:     GGATGAGGGAACTCCAGAACGAACATCACATGAAGGCTTTTGGTTTGCAG                         GTTTCAGCTGCTG
genomic: GGATGAGGGAACTCCAGAACGAACATCACATGAAGGCTTTTGGTTTGCAGgtagtaaaaa ... tggaaaacagGTTTCAGCTGCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatcttcctggccttgactcttgtttccttccattgactcccttggaaaacagGTTTCAGCTGCTGGTTATGACCGCCAAGGTGTGGCTGACCACGCAAGTAACCTGGCTACCAAAATTAGGAATAATCTCACCAATTCTATGAAGGCACTTG
                                 cattgac  putative branch site (score: 3)
                   ctcttgtttccttcca  CT-rich tract