1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtttggtggatcgttatgtatctgtcatattttgctagaattgtcttctgatactaattacttgtgtgtgtgtgtgtgatttcagTTTGAGGCTGCTTGGGCATTGACAAACATTGCTTCTGGGACTTCAGAGAATACAAAGGTGGTCATTGAACATGGTGCTGTTCCGATTTTTGTTCAACTAT
species | Arabidopsis thaliana |
transcript | AT4G16143.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCCTCGGTTTGTGGAATTTCTCACTAGAGAGGATTATCCACAGCTTCAG TTTGAGGCTGCTTGGGCATTGACAAACATTGCTTCTGGGACTTCAGAGAATEST: gi|124795333|gb|EH885012.1|EH885012
genomic: TGCCTCGGTTTGTGGAATTTCTCACTAGAGAGGATTATCCACAGCTTCAGgtttggtgga ... gtgatttcagTTTGAGGCTGCTTGGGCATTGACAAACATTGCTTCTGGGACTTCAGAGAAT
EST: TCCACAGCTTCAG TTTGAGGCTGCTTGGGCATTGACAAACATTGCTTCTGGGACTTCAGAGAATEST: gi|125223957|gb|EL238042.1|EL238042
genomic: TCCACAGCTTCAGgtttggtgga ... gtgatttcagTTTGAGGCTGCTTGGGCATTGACAAACATTGCTTCTGGGACTTCAGAGAAT
EST: TGCCTCGGTTTGTGGAATTTCTCACTAGAGAGGATTATCCACAGCTTCAG TTTGAGGCTGCTTGGGCATTGACAAACATTGCTTCTGGGACTTCAGA
genomic: TGCCTCGGTTTGTGGAATTTCTCACTAGAGAGGATTATCCACAGCTTCAGgtttggtgga ... gtgatttcagTTTGAGGCTGCTTGGGCATTGACAAACATTGCTTCTGGGACTTCAGA
tttgctagaattgtcttctgatactaattacttgtgtgtgtgtgtgtgatttcagTTTGAGGCTGCTTGGGCATTGACAAACATTGCTTCTGGGACTTCAGAGAATACAAAGGTGGTCATTGAACATGGTGCTGTTCCGATTTTTGTTCAACTAT
tactaat putative branch site (score: 1)
atactaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggtggatcgttatgtatctgtcatattttgctagaattgtcttctgatactaattacttgtgtgtgtgtgtgtgatttcagTTTGAGGCTGCTTGGGCATTGACAAACATTGCTTCTGGGACTTCAGAGAATACAAAGGTGGTCATTGAACATGGTGCTGTTCCGATTTTTGTTCAACTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT