1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aggttttgttaccaataatagtaaagatggttgatttacttagactctctctctctctctgttgtgtatgttactgattttagaagttttctttgtacagATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGTCAACCTGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTCCC
species | Arabidopsis thaliana |
transcript | AT4G15900.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGCAGATTCGTCTCAGCCATAAG ATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGTEST: gi|47829925|gb|CK119609.1|CK119609
genomic: CAAGCAGATTCGTCTCAGCCATAAGgtaaaacatt ... ctttgtacagATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGT
EST: CAAGCAGATTCGTCTCAGCCATAAG ATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGTEST: gi|19875877|gb|AU236708.1|AU236708
genomic: CAAGCAGATTCGTCTCAGCCATAAGgtaaaacatt ... ctttgtacagATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGT
EST: CAAGCAGATTCGTCTCAGCCATAAG ATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGT
genomic: CAAGCAGATTCGTCTCAGCCATAAGgtaaaacatt ... ctttgtacagATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGT
tctctctctctctctgttgtgtatgttactgattttagaagttttctttgtacagATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGTCAACCTGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTCCC
tactgat putative branch site (score: 2)
ttttctttgt putative PPT
attttagaagtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggttttgttaccaataatagtaaagatggttgatttacttagactctctctctctctctgttgtgtatgttactgattttagaagttttctttgtacagATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGTCAACCTGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
-ggttttg
- - - - - accaata
- - - - - - - - - -agtaaaga